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BioLiP
>protein
SNTRNFVLRDEDGNEHGVFTGKQPRQAALKAANRGSGTKANPDIIRLRERGTKKVHVFKAWKEIVDAPKNRPAWMPEKIS
KPFVKKERIEKLE

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2nbj:A 93 93 1.0000 1.0000 1.0000 1.08e-64
2 5fih:A 438 33 0.1290 0.0274 0.3636 0.46 5o9o:A, 5o9p:A, 5o9q:A, 5o9r:A, 5o9y:A, 5oa2:C, 5oa6:A, 2w62:A, 2w63:A
3 4pqi:A 238 14 0.0968 0.0378 0.6429 2.2
4 2g3f:A 414 31 0.1613 0.0362 0.4839 2.4 2bb0:A, 2bb0:B, 2g3f:B
5 4dwr:B 486 53 0.1505 0.0288 0.2642 4.9 8dc9:A, 8dc9:B, 8dca:A, 8dca:B, 8dcb:A, 8dcb:B, 8dcd:A, 8dcd:B, 8dcf:A, 8dcf:B, 8dcg:A, 8dcg:B, 4dwq:A, 4dwq:B, 4dwr:A, 4dwr:C, 4isj:A, 4isj:B, 4isz:A, 4isz:B, 4it0:A, 4it0:B, 7lfq:A, 1uc2:A, 1uc2:B
6 1zgs:A 442 25 0.0968 0.0204 0.3600 5.3 4mq0:A, 1zgs:B
7 6cxh:A 382 16 0.0968 0.0236 0.5625 5.9 7s4l:A, 7s4l:D, 7s4l:E
8 3chx:A 362 19 0.1075 0.0276 0.5263 9.3 3chx:E, 3chx:I
9 5enz:B 373 61 0.1828 0.0456 0.2787 9.4 5enz:A
10 1v72:A 345 19 0.1183 0.0319 0.5789 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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