Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SNSSKVSVLISLLEKSRDLDYIGEAINQLEHSLQCAYFAQRSGADNEMVLAALLHDLGHYCNDMGGYGVWQHEKVGADYL
RGLGFSERVACLIEGHVAAKRYLVSSKASYLKNLSDASRKTLEYQGGPMDEGERRLFEEREDFKDCLKIRAWDEKGKQTD
LKVPGPEHYRKMMEEHLSEN

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4mlm:A 188 185 1.0000 0.9574 0.9730 7.68e-132 4mlm:B, 4mln:A, 4mln:B, 4n6w:A, 4n71:A, 4n71:B, 4n71:D, 4n71:E
2 6npa:A 188 174 0.3389 0.3245 0.3506 5.77e-34 6npa:B, 6npa:C, 6npa:D
3 5eks:A 355 91 0.1444 0.0732 0.2857 0.074 5eks:B
4 1z26:A 716 45 0.1000 0.0251 0.4000 0.14 1z25:A
5 8jpx:B 770 45 0.1000 0.0234 0.4000 0.16 8jpx:A
6 8tjj:C 330 57 0.1111 0.0606 0.3509 1.6 8tjj:A, 8tjj:B, 8tjj:D, 8tjk:A, 8tjk:B
7 4zb8:A 220 151 0.1833 0.1500 0.2185 4.0 4zbd:A, 4zbd:B
8 3wfr:H 463 54 0.0944 0.0367 0.3148 5.2 3wfq:E, 3wfq:F, 3wfq:G, 3wfq:H, 3wfr:E, 3wfr:F, 3wfr:G, 3wfs:C, 3wfs:D
9 2hek:A 369 39 0.0889 0.0434 0.4103 7.5 2hek:B
10 8cg6:A 1208 72 0.1167 0.0174 0.2917 7.9
11 8cg5:A 1282 72 0.1167 0.0164 0.2917 7.9 6fij:B
12 5syt:A 444 21 0.0611 0.0248 0.5238 8.8 4aw6:A, 4aw6:B, 4aw6:D, 4aw6:E, 6bh8:B
13 3da3:A 270 39 0.0611 0.0407 0.2821 9.3 3da3:B, 2xmx:A, 2xmx:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218