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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATSKLSQG
KEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3vnb:A 149 147 0.9728 0.9597 0.9728 1.72e-104 4g0p:A, 4g0q:A, 4g0y:A, 4g0z:A, 3vna:A
2 7sva:A 792 146 0.7415 0.1376 0.7466 9.90e-74 7swf:A, 7swq:A
3 4krf:A 817 147 0.2925 0.0526 0.2925 3.55e-14 4kre:A, 4kxt:A, 1si2:A, 1si3:A, 5w6v:A
4 5vm9:C 785 148 0.2925 0.0548 0.2905 3.71e-14 5vm9:A
5 6oon:A 785 148 0.2993 0.0561 0.2973 4.37e-14
6 8d6j:A 810 148 0.2789 0.0506 0.2770 1.18e-12 9bez:A, 9bez:B, 9bez:C, 9bf0:A, 9bf0:B, 9bf0:C, 9bf2:A, 9bf2:B, 9bf2:C, 7c6b:A, 7c6b:B, 7c6b:C, 7d7u:A, 7d7u:B, 7d7u:C, 8d71:A, 4f3t:A, 5js1:A, 5js2:A, 5ki6:A, 7ki3:A, 7ki3:D, 3luc:A, 3luc:B, 3luc:C, 3lud:A, 3lud:B, 3lud:C, 3lug:A, 3lug:B, 3lug:C, 3luh:A, 3luh:B, 3luh:C, 3luj:A, 3luj:B, 3luj:C, 3luk:A, 3luk:B, 3luk:C, 6mdz:A, 6mdz:B, 6mfn:A, 6mfr:A, 6mfr:B, 6n4o:A, 6nit:A, 6nit:B, 4ola:A, 4olb:A, 3qx8:A, 3qx8:B, 3qx8:C, 3qx9:A, 3qx9:B, 3qx9:C, 6ra4:A, 6ra4:B, 5t7b:A, 4w5n:A, 4w5o:A, 4w5q:A, 4w5r:A, 4w5t:A, 4z4c:A, 4z4d:A, 4z4e:A, 4z4f:A, 4z4g:A, 4z4h:A, 4z4i:A
7 6cbd:A 787 148 0.2789 0.0521 0.2770 1.33e-12 5wea:A
8 4f1n:A 904 63 0.1429 0.0232 0.3333 1.87e-04 5the:A, 5the:C, 5the:E, 5the:G
9 4f1n:B 853 63 0.1429 0.0246 0.3333 2.02e-04
10 8r3z:A 755 148 0.2177 0.0424 0.2162 0.009
11 5bt9:C 250 39 0.1088 0.0640 0.4103 0.57 5bt9:A, 5bt9:B, 5bt9:D, 5tgd:A, 5tgd:B, 5tgd:C, 5tgd:D
12 7yfx:A 746 117 0.1769 0.0349 0.2222 0.74 7yfy:A, 7ygn:A
13 5guh:A 759 145 0.2041 0.0395 0.2069 1.3
14 6ul2:A 526 36 0.0816 0.0228 0.3333 1.3 8tti:A, 8tti:B, 8tti:C, 8tti:D, 8ttj:A, 8ttj:B, 8ttj:C, 8ttj:D, 6ul2:B, 6ul2:C, 6ul2:D
15 6qzk:A 746 84 0.1565 0.0308 0.2738 2.1
16 2apg:A 517 26 0.0680 0.0193 0.3846 4.4 2aqj:A, 2ar8:A, 2ard:A, 2jkc:A, 4z43:A, 4z44:A
17 7bh8:G 225 53 0.1156 0.0756 0.3208 8.0 7bh8:E
18 5dm6:A 274 46 0.1156 0.0620 0.3696 8.5 7a0r:A, 7a0s:A, 7a18:A, 3cf5:A, 3dll:A, 5dm7:A, 4io9:A, 4ioa:A, 4ioc:A, 5jvg:A, 5jvh:A, 1nkw:A, 1nwx:A, 1nwy:A, 3pio:A, 3pip:A, 1sm1:A, 4u67:A, 4v49:BA, 4v4a:BA, 4v4g:BD, 4v4g:DD, 4v4g:FD, 4v4g:HD, 4v4g:JD, 4wfn:A, 1xbp:A, 2zjp:A, 2zjq:A, 2zjr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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