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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNKERFLTLYHQIKSDANGYFSPEGIPYHSIETLICEAPDYGHMTTSEAYSYWLWLEVLYGHYTRDWSKLEAAWDNMEKY
IIPVNEDGNDEQPHMSAYNPSSPATYASEKPYPDQYPSQLSGARPAGQDPIDGELKSTYGTNETYLMHWLLDVDNWYKYG
NLLNPSHKAAYVNTFQRGQQESVWEAIPHPSQDDKSFGKPNEGFMSLFTKENQVPAAQWRYTNATDADARAIQAIYWAKE
LGYNNSTYLDKAKKMGDFLRYGMYDKYFQTIGSGKQGNPYPGNGKGACHYLMAWYTSWGGGLGDYANWSWRIGASHCHQG
YQNPVAAYALSSDKGGLKPSSATGASDWEKTLKRQLEFYVWLQSKEGAIAGGATNSWNGDYSAYPAGRSTFYDMAYEDAP
VYHDPPSNNWFGMQAWPMERVAELYYIFVKDGDKTSENVQMAKSCITKWVNYALDYIFIGSRPVSDEEGYFLDDQGRRIL
GGTNATVATTSAPGEFWLPGNIAWSGQPDTWNGFQSATGNPNLTAVTKDPTQDTGVLGSLVKAFTFFAAATKLETGNYTA
LGVRAKDAAAQLLEVAWNYNDGVGIVTEEEREDYDRFFKKEVYFPNGWNGTFGQGNQIPGSSTIPSDPQRGGNGVYTSFA
DLRPNIKQDPAWSSLESKYQSSFNEATGKWENGAPVFTYHRFWSQVDMATAYAEYHRLINL

The query sequence (length=701) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5bv9:A 701 701 1.0000 1.0000 1.0000 0.0 5cvy:A, 5vma:A
2 7kw6:A 697 698 0.7261 0.7303 0.7292 0.0
3 6d5d:A 627 703 0.4907 0.5486 0.4893 0.0 4el8:A, 4l0g:A, 4txt:A
4 1f9d:A 629 704 0.4608 0.5135 0.4588 0.0 1f9o:A, 1fae:A, 1fbo:A, 1fbw:A, 1fce:A, 1g9g:A, 1g9j:A, 2qno:A
5 1l1y:A 642 704 0.4864 0.5312 0.4844 0.0 1l1y:B, 1l1y:C, 1l1y:D, 1l1y:E, 1l1y:F, 1l2a:A, 1l2a:B, 1l2a:C, 1l2a:D, 1l2a:E, 1l2a:F, 5yj6:A
6 4xwl:A 634 705 0.4536 0.5016 0.4511 0.0 4xwm:A, 4xwn:A
7 4jjj:A 636 716 0.4650 0.5126 0.4553 0.0
8 4fus:A 635 695 0.4379 0.4835 0.4417 2.24e-177
9 3r5h:A 383 46 0.0243 0.0444 0.3696 2.3 4dlk:A, 4dlk:B, 3q2o:B, 3qff:A, 3qff:B, 3r5h:B, 3v4s:A, 3v4s:B
10 4v61:BQ 122 49 0.0200 0.1148 0.2857 4.9
11 8gym:b4 115 32 0.0185 0.1130 0.4062 6.8 8gym:B4, 8gzu:b4, 8gzu:B4
12 6yxx:Ba 153 94 0.0328 0.1503 0.2447 9.4 7aoi:Ba, 6hiv:Ba, 6hix:Ba, 6yxy:Ba
13 6uoe:H 225 76 0.0314 0.0978 0.2895 9.8
14 6f5k:A 558 67 0.0285 0.0358 0.2985 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218