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BioLiP
>protein
SNITYVKGNILKPKSYARILIHSCNCNGSWGGGIAYQLALRYPKAEKDYVEVCEKYGSNLLGKCILLPSYENSDLLICCL
FTSSFGEKQSILNYTKLALDKLKTFREIGDYLNGHIKYPIGEYKLEMPQINSGIAGVPWKETERVLEEFSGDMSFTVYQL

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6lfr:A 166 166 0.9938 0.9578 0.9578 3.94e-112 6lfs:A, 6lft:A, 6lfu:A, 6lfu:B
2 5m3e:A 152 151 0.2188 0.2303 0.2318 1.79e-04
3 7epu:B 748 159 0.2437 0.0521 0.2453 0.002 8b0a:K, 7enn:K, 7otq:K
4 4ryk:A 295 97 0.1875 0.1017 0.3093 0.92
5 2l8r:A 150 42 0.0875 0.0933 0.3333 1.3 4j5r:A, 4j5r:B, 4j5s:A, 4j5s:B, 4j5s:C, 4j5s:D
6 6ui4:A 692 42 0.0813 0.0188 0.3095 4.1
7 6gbn:B 435 79 0.1062 0.0391 0.2152 4.3 6gbn:A, 6gbn:C, 6gbn:D
8 3hbz:A 341 101 0.1688 0.0792 0.2673 5.5
9 4fln:B 464 35 0.0938 0.0323 0.4286 7.7 4fln:A, 4fln:C
10 5kis:A 1446 67 0.1313 0.0145 0.3134 8.6
11 6lqk:A 173 29 0.0875 0.0809 0.4828 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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