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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SNITYVKGNILKPKSYARILIASCNCNGSWGGGIAYQLALRYPKAEKDYVEVCEKYGSNLLGKCILLPSYENSDLLICCL
FTSSFGGSSHGEKQSILNYTKLALDKLKTFREAIGDYLNGHIKYPIGEYKLEMPQINSGIFGVPWKETERVLEEFSGDMS
FTVYQL

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6lfr:A 166 166 0.9940 0.9940 0.9940 3.76e-121 6lfs:A, 6lft:A, 6lfu:A, 6lfu:B
2 5m3e:A 152 152 0.1988 0.2171 0.2171 1.08e-04
3 2l8r:A 150 42 0.0843 0.0933 0.3333 1.9 4j5r:A, 4j5r:B, 4j5s:A, 4j5s:B, 4j5s:C, 4j5s:D
4 3bvo:A 197 92 0.1446 0.1218 0.2609 2.4 3bvo:B
5 1a80:A 277 22 0.0602 0.0361 0.4545 4.3 1m9h:A
6 8h9d:A 1114 31 0.0783 0.0117 0.4194 4.3
7 4fln:B 464 35 0.0904 0.0323 0.4286 8.1 4fln:A, 4fln:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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