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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNIAGMIVFLDPGHNGANDASIGRQVPTGRGGTKNCQESGTATDDGYPEHSFTWDTTLRVRAALTALGVRTAMSRGNDNA
LGPCVDERAAMANSLRPHAIVSIHADGGPPTGRGFHVLYSSPPLNAAQSGPSVQFAKVMRDQLAASGIPPATYIGQGGLN
PRSDIAGLNLAQFPSVLVECGNMKNPVDSALMKSPEGRQKYADAIVRGIAGFLGSQ

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7agm:A 218 216 1.0000 0.9908 1.0000 9.21e-161 7agm:B
2 4m6g:A 214 214 0.7963 0.8037 0.8037 7.86e-131 4lq6:A, 4m6i:A, 4m6i:B
3 7ago:A 214 211 0.6759 0.6822 0.6919 1.33e-107 7agl:A
4 5j72:A 638 196 0.2130 0.0721 0.2347 3.62e-10 5j72:B
5 4rn7:A 186 216 0.2361 0.2742 0.2361 1.25e-07
6 8c0j:A 200 221 0.2824 0.3050 0.2760 1.18e-06 8c0j:C
7 7rag:B 197 220 0.2083 0.2284 0.2045 1.40e-06
8 5emi:A 180 210 0.2593 0.3111 0.2667 2.09e-06
9 7tj4:B 176 217 0.2454 0.3011 0.2442 1.27e-05 7tj4:D
10 8c2o:A 228 241 0.2685 0.2544 0.2407 1.55e-05 8c2o:B
11 4bin:A 348 231 0.2361 0.1466 0.2208 1.73e-05
12 1jwq:A 179 166 0.1852 0.2235 0.2410 0.002
13 7b3n:B 170 116 0.1528 0.1941 0.2845 0.002 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
14 3ne8:A 226 50 0.0787 0.0752 0.3400 0.010
15 8dek:B 441 69 0.0833 0.0408 0.2609 0.26 8dek:A, 8df2:A, 8df2:B, 8df2:C, 8df2:D
16 6vwf:A 450 64 0.0787 0.0378 0.2656 9.6 6vwf:B
17 6s85:B 356 50 0.0694 0.0421 0.3000 9.9 7yzp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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