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BioLiP
>protein
SNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLED

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yiz:A 68 68 1.0000 1.0000 1.0000 6.33e-46 2yiz:D, 2yiz:B, 2yiz:C, 2yj0:A, 2yj0:B, 2yj0:D, 2yj0:C, 2yj0:E, 2yj0:F
2 6r1e:A 70 68 0.6471 0.6286 0.6471 8.24e-31 6r1e:C, 6r1e:D, 6r1e:B
3 2vxa:A 66 66 0.4853 0.5000 0.5000 3.01e-22 2vxa:E, 2vxa:K, 2vxa:C, 2vxa:G, 2vxa:D, 2vxa:I, 2vxa:L, 2vxa:F, 2vxa:B, 2vxa:H, 2vxa:J
4 2cz8:D 68 64 0.5147 0.5147 0.5469 1.48e-15 2cz8:A, 2cz8:C, 2cz8:B, 2cz8:E, 2cz8:G, 2cz8:F, 2cz8:H, 2ux9:A, 2ux9:C, 2ux9:E, 2ux9:B, 2ux9:D, 2ux9:F, 2v18:A, 2v18:B, 2v18:H, 2v18:C, 2v18:F, 2v18:G, 2v18:J, 2v18:E, 2v18:D, 2v18:K, 2v18:I, 2v18:L, 2v19:A, 2v19:I, 2v19:E, 2v19:B, 2v19:F, 2v19:C, 2v19:K, 2v19:G, 2v19:D, 2v19:H, 2v19:J, 2v19:L, 2v21:A, 2v21:B, 2v21:C, 2v21:D, 2v21:F, 2vyx:A, 2vyx:B, 2vyx:L, 2vyx:G, 2vyx:H, 2vyx:C, 2vyx:F, 2vyx:E, 2vyx:J, 2vyx:D, 2vyx:I, 2vyx:K
5 6ex6:A 634 33 0.1912 0.0205 0.3939 0.052 6ex6:B
6 1gc5:A 467 46 0.1912 0.0278 0.2826 0.35 4b8s:A
7 5o5z:A 454 46 0.1912 0.0286 0.2826 0.37 5o5y:B, 5o5z:B
8 6kaj:A 446 32 0.1912 0.0291 0.4062 1.0 6kaj:B, 6kaj:C, 6kaj:D, 6kak:A, 6kak:B, 6kak:C, 6kak:D, 6kal:A, 6kal:B, 6kal:C, 6kal:D, 6kam:A, 6kam:B, 6kam:C, 6kam:D, 6kan:A, 6kan:B, 6kan:C, 6kan:D, 6l7s:A, 6l7s:B, 6l7s:C, 6l7s:D, 6l7t:A, 6l7t:B, 6l7t:C, 6l7t:D, 6l7u:A, 6l7u:B, 6l7u:C, 6l7u:D
9 3ecr:A 318 39 0.2353 0.0503 0.4103 2.7 7ccx:C, 3ecr:B, 3eq1:A, 3eq1:B
10 7aak:A 345 39 0.2353 0.0464 0.4103 3.3 7aaj:B, 7aaj:A, 7aak:B, 7ccx:A, 7ccy:A, 7ccy:C, 7ccz:A, 7ccz:B, 7cd0:A, 7cd0:B, 5m6r:A, 5m6r:B, 5m7f:A, 5m7f:B, 8pnd:A, 8pnd:B
11 4p2o:C 200 19 0.1471 0.0500 0.5263 3.6 4p2q:D, 4p2q:I, 4p2q:N, 4p2q:S, 4p2r:D, 4p2r:I, 4p2r:N, 4p2r:S, 3qib:C, 3qiu:C, 3qiw:C
12 2iz1:B 471 62 0.2794 0.0403 0.3065 5.4 2iyo:A, 2iyp:A, 2iyp:B, 2iyp:C, 2iz0:A, 2iz0:B, 2iz0:C, 2iz1:A, 2iz1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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