Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SNHTYRVIEIVGTSPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAVAHFQVCMKVGFRLED

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yiz:A 68 68 0.9853 0.9853 0.9853 3.18e-45 2yiz:D, 2yiz:B, 2yiz:C, 2yj0:A, 2yj0:B, 2yj0:D, 2yj0:C, 2yj0:E, 2yj0:F
2 6r1e:A 70 68 0.6471 0.6286 0.6471 6.06e-31 6r1e:C, 6r1e:D, 6r1e:B
3 2vxa:A 66 66 0.4706 0.4848 0.4848 1.22e-21 2vxa:E, 2vxa:K, 2vxa:C, 2vxa:G, 2vxa:D, 2vxa:I, 2vxa:L, 2vxa:F, 2vxa:B, 2vxa:H, 2vxa:J
4 2cz8:D 68 64 0.5147 0.5147 0.5469 1.14e-15 2cz8:A, 2cz8:C, 2cz8:B, 2cz8:E, 2cz8:G, 2cz8:F, 2cz8:H, 2ux9:A, 2ux9:C, 2ux9:E, 2ux9:B, 2ux9:D, 2ux9:F, 2v18:A, 2v18:B, 2v18:H, 2v18:C, 2v18:F, 2v18:G, 2v18:J, 2v18:E, 2v18:D, 2v18:K, 2v18:I, 2v18:L, 2v19:A, 2v19:I, 2v19:E, 2v19:B, 2v19:F, 2v19:C, 2v19:K, 2v19:G, 2v19:D, 2v19:H, 2v19:J, 2v19:L, 2v21:A, 2v21:B, 2v21:C, 2v21:D, 2v21:F, 2vyx:A, 2vyx:B, 2vyx:L, 2vyx:G, 2vyx:H, 2vyx:C, 2vyx:F, 2vyx:E, 2vyx:J, 2vyx:D, 2vyx:I, 2vyx:K
5 5o5z:A 454 46 0.1912 0.0286 0.2826 0.25 5o5y:B, 5o5z:B
6 1gc5:A 467 46 0.1912 0.0278 0.2826 0.25 4b8s:A
7 6ex6:A 634 33 0.1765 0.0189 0.3636 0.32 6ex6:B
8 6kaj:A 446 32 0.1912 0.0291 0.4062 1.00 6kaj:B, 6kaj:C, 6kaj:D, 6kak:A, 6kak:B, 6kak:C, 6kak:D, 6kal:A, 6kal:B, 6kal:C, 6kal:D, 6kam:A, 6kam:B, 6kam:C, 6kam:D, 6kan:A, 6kan:B, 6kan:C, 6kan:D, 6l7s:A, 6l7s:B, 6l7s:C, 6l7s:D, 6l7t:A, 6l7t:B, 6l7t:C, 6l7t:D, 6l7u:A, 6l7u:B, 6l7u:C, 6l7u:D
9 6c0d:A 404 46 0.2206 0.0371 0.3261 1.1
10 3ecr:A 318 39 0.2353 0.0503 0.4103 2.8 7ccx:C, 3ecr:B, 3eq1:A, 3eq1:B
11 7aak:A 345 39 0.2353 0.0464 0.4103 3.4 7aaj:B, 7aaj:A, 7aak:B, 7ccx:A, 7ccy:A, 7ccy:C, 7ccz:A, 7ccz:B, 7cd0:A, 7cd0:B, 5m6r:A, 5m6r:B, 5m7f:A, 5m7f:B, 8pnd:A, 8pnd:B
12 4p2o:C 200 19 0.1471 0.0500 0.5263 3.9 4p2q:D, 4p2q:I, 4p2q:N, 4p2q:S, 4p2r:D, 4p2r:I, 4p2r:N, 4p2r:S, 3qib:C, 3qiu:C, 3qiw:C
13 4hiz:A 658 35 0.1618 0.0167 0.3143 4.9 4hiz:B, 4hiz:C
14 5zme:A 638 36 0.1765 0.0188 0.3333 8.2 5zmf:A
15 2i4n:B 442 13 0.1324 0.0204 0.6923 9.6 2i4m:B, 2i4m:C, 2i4n:A, 2i4n:C, 2i4o:A, 2i4o:B, 2i4o:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218