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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SNFHNPYNFVPALPRDGITGDLGDCAPAGHSYYHGDKYSGRIAVKLTTVTPLLIPDASKEEINNNHKTYPVRIGKDGKPY
LPPTSIKGMLRSAYEAVTNSRLAVFEDHDSRLAYRMPATMGLQMVPARIEGDNIVLYPGTSRIGNNGRPANNDPMYAAWL
PYYQNRIAYQMAEHGDHVRFWAERYTRGNFCYWRVRQIARHNQNLGNRPERGRNYGQHHSTGVIEQFEGFVYKTNKNIGN
KHDERVFIIDRESIEIPLSRDLRRKWRELITSYQEIHKKEVDRGDTGPSAVNGAVWSRQIIADESERNLSDGTLCYAHVK
KEDGQYKILNLYPVMITRGLYEIAPVDLLDETLKPATDKKQLSPADRVFGWVNQRGNGCYKGQLRIHSVTCQHDDAIDDF
GNQNFSVPLAILGQPKPEQARFYCADDRKGIPLEDGYDRDDGYSDSEQGLRGRKVYPHHKGLPNGYWSNPTEDRSQQAIQ
GHYQEYRRPKKDGLEQRDDQNRSVKGWVKPLTEFTFEIDVTNLSEVELGALLWLLTLPDLHFHRLGGGKPLGFGSVRLDI
DPDKTDLRNGAGWRDYYGSLLETSQPDFTTLISQWINAFQTAVKEEYGSSSFDQVTFIKASGQSLQGFHDNASIHYPRST
PEPKPDGEAFKWFVANEKGRRLALPALEKSQSFPIKPS

The query sequence (length=678) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8s9u:E 678 678 1.0000 1.0000 1.0000 0.0 8s9t:E, 8s9v:E, 8s9x:E
2 8wm4:A 1331 551 0.2153 0.1097 0.2650 6.92e-25
3 7y9x:A 1458 610 0.2257 0.1049 0.2508 1.15e-24 8gs2:A
4 7y9y:A 1482 162 0.0737 0.0337 0.3086 8.39e-13 8wml:A
5 7y9y:A 1482 355 0.1327 0.0607 0.2535 2.50e-09 8wml:A
6 7wah:A 1473 165 0.0737 0.0339 0.3030 9.52e-13
7 7wah:A 1473 333 0.1342 0.0618 0.2733 1.58e-12
8 7yn9:A 1514 333 0.1342 0.0601 0.2733 1.29e-12
9 7yn9:A 1514 179 0.0752 0.0337 0.2849 5.91e-12
10 8eey:A 1544 169 0.0737 0.0324 0.2959 2.82e-12 7yna:A, 7ynb:A, 7ync:A
11 8eey:A 1544 355 0.1327 0.0583 0.2535 2.91e-09 7yna:A, 7ynb:A, 7ync:A
12 8wmi:A 1237 108 0.0590 0.0323 0.3704 4.06e-12
13 8wmi:A 1237 245 0.0988 0.0542 0.2735 8.43e-08
14 8d97:A 1600 326 0.1386 0.0587 0.2883 5.73e-12
15 8d97:A 1600 95 0.0516 0.0219 0.3684 2.04e-08
16 7ynd:A 1567 179 0.0752 0.0325 0.2849 6.11e-12
17 7ynd:A 1567 355 0.1327 0.0574 0.2535 3.26e-09
18 8wmc:A 1249 89 0.0501 0.0272 0.3820 4.90e-11
19 8wmc:A 1249 213 0.0914 0.0496 0.2911 2.79e-07
20 8eex:A 1284 107 0.0560 0.0296 0.3551 8.75e-11
21 8eex:A 1284 213 0.0914 0.0483 0.2911 2.69e-07
22 7y82:A 1341 309 0.1239 0.0626 0.2718 2.02e-10
23 7y82:A 1341 95 0.0546 0.0276 0.3895 8.86e-10
24 8d1v:A 1229 107 0.0546 0.0301 0.3458 4.82e-10
25 8d1v:A 1229 213 0.0914 0.0504 0.2911 3.00e-07
26 7zol:B 1702 99 0.0531 0.0212 0.3636 3.14e-09 7zoq:B
27 7zol:B 1702 341 0.1342 0.0535 0.2669 6.81e-09 7zoq:B
28 7y8t:A 1298 105 0.0560 0.0293 0.3619 4.30e-09 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
29 7y8t:A 1298 216 0.0944 0.0493 0.2963 1.23e-07 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
30 8d8n:B 1256 92 0.0516 0.0279 0.3804 8.24e-09 8d9e:B, 8d9i:B, 7y81:A
31 8d8n:B 1256 216 0.0944 0.0510 0.2963 9.61e-08 8d9e:B, 8d9i:B, 7y81:A
32 7xss:B 1282 98 0.0501 0.0265 0.3469 4.96e-08 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
33 7xss:B 1282 216 0.0944 0.0499 0.2963 1.43e-07 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
34 7y84:A 1242 90 0.0501 0.0274 0.3778 7.30e-08 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
35 7y84:A 1242 216 0.0900 0.0491 0.2824 1.47e-07 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
36 7y80:A 1218 90 0.0501 0.0279 0.3778 7.46e-08 8gu6:A
37 7y80:A 1218 216 0.0900 0.0501 0.2824 1.41e-07 8gu6:A
38 8gna:A 1188 82 0.0457 0.0261 0.3780 9.42e-08
39 8gna:A 1188 216 0.0900 0.0513 0.2824 1.44e-07
40 6mur:D 287 44 0.0265 0.0627 0.4091 0.014 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
41 5ldj:B 175 123 0.0501 0.1943 0.2764 0.15 5ldj:A, 5ldj:C, 5ldj:D, 5ldk:B, 5ldm:A, 5ldm:B, 5ldo:A, 5ldp:A, 5ldp:B, 5ldq:A, 5ldq:B, 5ldq:C, 5ldq:D, 4qak:A, 4qak:B
42 8x5d:N 370 28 0.0192 0.0351 0.4643 2.0
43 8wfx:N 265 18 0.0177 0.0453 0.6667 2.4
44 4r70:A 498 99 0.0354 0.0482 0.2424 5.8 2ool:A, 2ool:B, 4r70:B
45 8x2h:A 2363 58 0.0236 0.0068 0.2759 7.3 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
46 8x2i:A 2303 58 0.0236 0.0069 0.2759 7.4
47 1lv2:A 225 62 0.0280 0.0844 0.3065 8.1
48 6muu:F 323 31 0.0192 0.0402 0.4194 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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