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BioLiP
>protein
SNDSSDPLVVAASIIGILHLILWILDRLFFK

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ly0:A 31 31 0.9677 0.9677 0.9677 3.38e-15 2muw:C
2 2rlf:C 38 27 0.8710 0.7105 1.0000 1.35e-12
3 3of1:A 246 21 0.2903 0.0366 0.4286 0.88
4 6slf:A 398 19 0.3548 0.0276 0.5789 1.5 6slf:B, 6slf:C, 6slf:D
5 1qle:A 538 17 0.2581 0.0149 0.4706 6.6 1ar1:A, 7ate:A, 7atn:A, 7au3:A, 7au6:A, 3ehb:A, 3hb3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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