Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYNTFCIYKRCRHPGELRNGQVEIK
TDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHPLPQCEI

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hyp:A 125 125 1.0000 1.0000 1.0000 9.00e-92 5hyt:B, 5hyt:D, 5hyt:F, 5hyt:H
2 8tgt:C 70 95 0.5520 0.9857 0.7263 9.26e-38
3 1ckl:A 126 126 0.3200 0.3175 0.3175 3.73e-10 1ckl:B, 1ckl:D, 1ckl:E, 1ckl:F, 2o39:C, 2o39:D
4 2xwb:F 714 112 0.2480 0.0434 0.2768 6.28e-05 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
5 8a7d:Q 273 119 0.2800 0.1282 0.2941 2.07e-04
6 8a7d:Q 273 81 0.1360 0.0623 0.2099 7.7
7 4c16:A 280 106 0.2320 0.1036 0.2736 0.013 4c16:B, 4csy:A, 4csy:B, 1esl:A, 6eyi:A, 6eyj:A, 6eyj:B, 6eyk:A, 1g1t:A
8 8hgg:C 1484 130 0.2640 0.0222 0.2538 0.015 8hgg:D, 8hgh:A, 8hgh:B
9 8a7e:C 1524 117 0.2480 0.0203 0.2650 0.021 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
10 7nyc:C 809 43 0.1200 0.0185 0.3488 0.12 7nyd:C
11 7nyc:C 809 107 0.2320 0.0358 0.2710 9.5 7nyd:C
12 2uwn:A 187 86 0.1760 0.1176 0.2558 0.43 2v8e:A, 7zjm:B
13 8typ:A 310 35 0.0960 0.0387 0.3429 0.98 1elv:A, 8gmn:A, 8gmn:B, 8gmn:C, 8gmn:D
14 6dvv:A 435 107 0.2240 0.0644 0.2617 1.1 6dux:A, 6dux:B, 6dvv:B
15 8dvv:A 3886 62 0.1520 0.0049 0.3065 2.1 8dvv:B, 8dvv:C, 8dvv:D
16 7edc:A 236 92 0.1360 0.0720 0.1848 2.7
17 7k76:A 223 34 0.0960 0.0538 0.3529 3.5 7k76:H
18 7k75:A 225 34 0.0960 0.0533 0.3529 3.7 7k75:M, 7k75:C, 7k75:I
19 5uxd:A 300 47 0.1200 0.0500 0.3191 4.3 5uxc:A, 5uxd:B
20 7n28:X 225 57 0.1440 0.0800 0.3158 4.4 7mxd:X
21 7kc1:H 125 33 0.0880 0.0880 0.3333 8.0 7kc1:E, 7kc1:J
22 8ido:C 128 44 0.1200 0.1172 0.3409 8.2 8ido:D
23 2a9w:A 264 49 0.1120 0.0530 0.2857 8.6 2a9w:B, 2a9w:C, 2a9w:D, 1aiq:A, 1aiq:B, 1aob:A, 1axw:A, 1axw:B, 3b5b:A, 3b5b:B, 3b9h:A, 2bbq:A, 2bbq:B, 1bdu:A, 3bfi:A, 3bgx:A, 3bhl:A, 3bhl:B, 3bhr:A, 1bid:A, 1bjg:A, 1bq1:A, 1bq1:B, 6cdz:A, 6cdz:B, 1ddu:A, 1ddu:B, 1dna:A, 1dna:B, 1f4c:A, 1f4c:B, 1f4d:A, 1f4d:B, 1f4e:A, 1f4f:A, 1f4f:B, 1f4g:A, 1f4g:B, 2fto:X, 1fwm:A, 1fwm:B, 2g8x:A, 2g8x:B, 4gev:A, 4gev:B, 4isk:A, 4isk:B, 4isk:C, 4isk:F, 4isk:D, 4isk:E, 4isk:G, 4isk:H, 1jg0:A, 1jg0:B, 1jtq:A, 1jtq:B, 1jtu:A, 1jtu:B, 1jut:A, 1jut:B, 7jx1:A, 7jx1:B, 7jxf:A, 7jxf:B, 1kce:A, 1kce:B, 2kce:A, 2kce:B, 1kzi:A, 1kzi:B, 1kzj:A, 1kzj:B, 1kzj:C, 1kzj:D, 1kzj:E, 1kzj:F, 4lrr:A, 1nce:A, 1nce:B, 6nnr:A, 6nnr:B, 1syn:A, 1syn:B, 1tdu:A, 1tdu:B, 1tlc:A, 1tlc:B, 1tls:A, 1tls:B, 1trg:A, 1tsd:A, 1tsd:B, 1tsn:A, 2tsc:A, 2tsc:B, 1tys:A, 2vet:A, 2vf0:A, 2vf0:B, 1zpr:A, 1zpr:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218