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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SNAMVDKRESYTKEDLEASGRGELFGAGGPPLPAGNMLMMDRIVKMIEDGGSHNKGYVEAELDINPDLWFFGCHFIGDPV
MPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPDAKKVTYRINFKRVIMRKLIMGVADGEVLVDGKVIYT
ATDLKVGLFKDTN

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5f6r:A 173 173 1.0000 1.0000 1.0000 8.26e-126 5f6r:B
2 1mka:A 171 169 0.8497 0.8596 0.8698 1.32e-107 4keh:A, 4keh:B, 1mka:B
3 7bka:E 171 167 0.6416 0.6491 0.6647 2.98e-78 4b0b:A, 4b0b:B, 4b0c:A, 4b0c:B, 4b0c:D, 4b0c:C, 4b0c:E, 4b0i:A, 4b0i:B, 4b0i:C, 4b0i:D, 4b0i:E, 4b0j:A, 4b0j:B, 4b0j:C, 4b0j:D, 4b0j:E, 4b0j:F, 4b0j:G, 4b0j:H, 4b0j:I, 4b0j:J, 4b0j:K, 4b0j:L, 4b0j:M, 4b0j:N, 4b0j:O, 4b0j:P, 4b0j:Q, 4b0j:R, 4b0j:S, 4b0j:T, 8b72:A, 8b72:B, 4b8u:A, 4b8u:B, 7bhj:B, 7bhj:C, 7bhj:D, 7bhj:E, 7bis:A, 7bis:B, 7bis:C, 7bis:D, 7bis:E, 7bk9:A, 7bk9:B, 7bk9:C, 7bk9:D, 7bk9:E, 7bka:A, 7bka:B, 7bka:C, 7bka:D, 4cl6:A, 4cl6:B, 4cl6:C, 4cl6:D, 4cl6:E
4 6n3p:D 146 130 0.2139 0.2534 0.2846 7.03e-05 6n3p:A, 6n3p:B, 6n3p:C, 6n3p:E, 6n3p:F
5 3az8:F 146 136 0.2081 0.2466 0.2647 0.040 3az8:C, 3az8:D, 3az8:E, 3az8:O, 3az8:P, 3az8:Q, 3az8:R, 3az9:C, 3az9:D, 3az9:E, 3az9:F, 3az9:M, 3az9:N, 3az9:O, 3az9:P, 3az9:Q, 3az9:R, 3aza:A, 3aza:B, 3aza:C, 3aza:D, 3aza:M, 3aza:N, 3aza:O, 3aza:P, 3aza:Q, 3aza:R, 3aza:U, 3aza:V, 3azb:C, 3azb:D, 3azb:G, 3azb:H, 3azb:I, 3azb:J, 3azb:O, 3azb:P
6 3b7j:A 152 133 0.1965 0.2237 0.2556 0.081 3b7j:C, 3cf8:A, 3cf8:B, 3cf8:C, 3cf9:A, 3cf9:B, 3cf9:C, 3d04:A, 3d04:B, 3d04:C, 3d04:D, 3doy:A, 3doy:B, 3doy:C, 3doy:D, 3doz:A, 3doz:B, 3doz:C, 3doz:D, 3dp0:A, 3dp0:B, 3dp1:A, 3dp1:B, 3dp1:C, 3dp1:D, 3dp2:A, 3dp2:B, 3dp2:C, 3dp3:A, 3dp3:B, 3dp3:C, 3dp3:D, 3ed0:A, 3ed0:B, 3ed0:C, 2glm:A, 2glm:B, 2glp:A, 2glp:B, 2glp:C, 2glp:D, 6ihc:A, 6ihc:B, 4zjb:A
7 4d2s:A 249 70 0.1387 0.0964 0.3429 0.087 4c4h:A
8 8agd:A 1111 41 0.1040 0.0162 0.4390 0.21 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
9 7qv0:A 139 94 0.1676 0.2086 0.3085 0.23 7qv0:B, 7qv0:C
10 4quv:A 393 71 0.1214 0.0534 0.2958 0.66 4quv:B
11 4hdr:B 329 67 0.1098 0.0578 0.2836 0.78 4hdk:B, 4hdm:B, 4hdr:D
12 4ybg:A 238 97 0.1676 0.1218 0.2990 2.4
13 1mpy:A 307 52 0.0867 0.0489 0.2885 5.0 1mpy:B, 1mpy:C, 1mpy:D
14 2crc:A 52 13 0.0462 0.1538 0.6154 6.7
15 4l6v:F 125 51 0.0867 0.1200 0.2941 7.0 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218