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BioLiP
>protein
SNAMKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAE
CIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQ
AIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRWYESWPDT

The query sequence (length=235) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3s7z:B 235 235 1.0000 1.0000 1.0000 4.93e-175
2 2dx7:A 228 224 0.3404 0.3509 0.3571 7.02e-41
3 5wxy:A 227 222 0.2894 0.2996 0.3063 6.53e-18 5wxz:A, 5xni:A, 5xnj:A, 5xnk:A
4 3ojc:A 230 160 0.2213 0.2261 0.3250 6.19e-14 3ojc:B
5 5elm:B 235 150 0.2043 0.2043 0.3200 2.50e-07 5elm:C, 5elm:D, 5hra:A, 5hra:B, 5hrc:A, 5hrc:B
6 1zuw:C 262 167 0.1957 0.1756 0.2754 3.35e-05 1zuw:A, 1zuw:B
7 3uhf:A 255 140 0.1617 0.1490 0.2714 2.29e-04 3uhf:B, 3uho:A, 3uho:B
8 1b74:A 252 160 0.1574 0.1468 0.2313 5.95e-04
9 2ohv:A 258 181 0.1745 0.1589 0.2265 0.23
10 6dli:A 256 134 0.1489 0.1367 0.2612 0.80 6dli:B, 6dli:C, 6dli:D, 5w16:A, 5w16:B, 5w16:C, 5w16:D
11 3out:B 264 150 0.1489 0.1326 0.2333 0.91 3out:A, 3out:C
12 5fvc:D 369 62 0.0638 0.0407 0.2419 1.4 5fvc:A, 5fvc:B, 5fvc:C, 5fvc:E, 5fvc:F, 5fvc:G, 5fvc:H, 5fvc:I, 5fvc:J, 5fvd:A, 5fvd:C, 8pdl:A, 8pdm:A, 8pdn:A, 8pdn:B, 8pdn:C, 8pdn:D, 8pdn:E, 8pdn:F, 8pdn:G, 8pdn:H, 8pdn:I, 8pdn:J, 8pdn:K, 8pdn:L, 8pdo:A, 8pdo:B, 8pdp:A, 8pdq:A, 8pdr:A, 8pdr:B, 8pdr:C, 8pdr:D, 8pdr:E, 8pdr:F, 8pdr:G, 8pdr:H, 8pdr:I, 8pdr:J, 8pdr:K, 8pds:A, 8pds:C
13 5ijw:B 276 132 0.1277 0.1087 0.2273 1.6 5ijw:A
14 5odc:B 291 98 0.1234 0.0997 0.2959 2.6 5odc:H, 5odh:B, 5odh:H, 5odi:B, 5odi:H, 5odq:B, 5odq:H, 5odr:B, 5odr:H
15 3bu7:B 358 49 0.0638 0.0419 0.3061 3.9 3bu7:A
16 5oql:E 331 44 0.0511 0.0363 0.2727 4.9 6rxt:UF, 6rxu:UF, 6rxv:UF, 6rxy:UF, 6rxz:UF
17 7cns:B 131 59 0.0681 0.1221 0.2712 5.1
18 5v85:B 279 22 0.0426 0.0358 0.4545 6.6 5v85:A
19 3lop:A 353 67 0.0851 0.0567 0.2985 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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