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BioLiP
>protein
SNAMILVPIDISDERIISHVESEARIDDAEVHFLTVIPSLGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKI
LALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3fdx:A 127 129 0.9840 0.9685 0.9535 7.53e-80 3fdx:B, 3fh0:A, 3fh0:B
2 4r2l:A 142 142 0.7680 0.6761 0.6761 1.80e-61 4r2l:B, 4r2m:A, 4r2m:B
3 3tnj:A 130 132 0.3040 0.2923 0.2879 9.46e-07
4 5cb0:A 290 121 0.2640 0.1138 0.2727 1.89e-06 5cb0:B, 4r2j:A
5 4wy2:A 308 88 0.2160 0.0877 0.3068 2.58e-06
6 3hgm:A 147 74 0.2080 0.1769 0.3514 1.85e-05 3hgm:B, 3hgm:C, 3hgm:D
7 2z09:A 124 54 0.1600 0.1613 0.3704 0.002 2z08:A
8 1mjh:B 144 135 0.2720 0.2361 0.2519 0.004 1mjh:A
9 2gm3:A 153 55 0.1360 0.1111 0.3091 0.010 2gm3:B, 2gm3:C, 2gm3:D, 2gm3:E, 2gm3:F
10 3loq:A 273 60 0.1360 0.0623 0.2833 0.030 3loq:B
11 3s3t:A 145 146 0.2960 0.2552 0.2534 0.033 3s3t:B, 3s3t:C, 3s3t:D, 3s3t:E, 3s3t:F, 3s3t:G, 3s3t:H
12 5ahw:C 146 52 0.1520 0.1301 0.3654 0.13
13 5ahw:B 127 52 0.1520 0.1496 0.3654 0.15 5ahw:A, 5ahw:D, 5ahw:E, 5ahw:F
14 6n7l:C 344 111 0.2640 0.0959 0.2973 1.0 6n7l:A, 6n7l:B, 6n7l:D, 6n7l:E, 6n7l:F, 6n7l:G, 6n7l:H, 6n7l:I, 6n7l:J, 6n7l:K, 6n7l:L
15 8u51:A 267 64 0.1520 0.0712 0.2969 1.9
16 8bcj:B 250 56 0.0960 0.0480 0.2143 2.4 8bcj:A, 8bcj:C, 8bcj:D
17 7oq6:A 399 48 0.1360 0.0426 0.3542 2.9 7oq6:B
18 1lnz:A 342 29 0.1040 0.0380 0.4483 3.0 1lnz:B
19 3gvh:A 318 26 0.0960 0.0377 0.4615 3.0 3gvh:B, 3gvh:C, 3gvh:D, 3gvi:A, 3gvi:B, 3gvi:C, 3gvi:D, 3gvi:E, 3gvi:F
20 3x1l:H 297 34 0.1120 0.0471 0.4118 4.1
21 8ct0:H 178 47 0.1120 0.0787 0.2979 9.6 8ct0:A, 8ct0:B, 8ct0:C, 8ct0:G, 8ct0:D, 8ct0:E, 8ct0:F
22 7na0:A 981 20 0.0720 0.0092 0.4500 9.6 7na0:B, 4nm9:A, 4nm9:B, 4nma:A, 4nma:B, 4nmb:A, 4nmb:B, 4nmc:B, 4nmd:A, 4nmd:B, 4nme:A, 4nme:B, 4nmf:A, 4nmf:B
23 3u4j:A 505 39 0.0880 0.0218 0.2821 9.8
24 4nmc:A 941 20 0.0720 0.0096 0.4500 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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