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BioLiP
>protein
SNAMIKQLFTHTQTVTSEFIDHNNHMHDANYNIIFSDVVNRFNYSHGLSLKERENLAYTLFTLEEHTTYLSELSLGDVFT
VTLYIYDYDYKRLHLFLTLTKEDGTLASTNEVMMMGINQHTRRSDAFPESFSTQIAHYYKNQPTITWPEQLGHKIAIP

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eo2:C 158 158 1.0000 1.0000 1.0000 1.75e-117 5eo2:B, 5eo2:E, 5eo2:F
2 5eo2:A 133 154 0.8418 1.0000 0.8636 1.57e-88
3 5eo2:D 120 154 0.7595 1.0000 0.7792 2.76e-78
4 2gf6:A 134 123 0.1835 0.2164 0.2358 0.11 2gf6:B, 2gf6:C, 2gf6:D
5 2np0:A 1289 72 0.1392 0.0171 0.3056 0.22 1epw:A, 2etf:A, 2etf:B, 1f31:A, 1f82:A, 6g5f:B, 6g5g:B, 6g5k:A, 6g5k:B, 1g9a:A, 1g9b:A, 1g9c:A, 1g9d:A, 1i1e:A, 4kbb:A, 4kbb:B, 7na9:A, 2nm1:A, 6qns:A, 1s0b:A, 1s0c:A, 1s0d:A, 1s0e:A, 1s0f:A, 7t5f:A, 7t5f:D, 2xhl:A, 3zuq:A, 6zvm:AAA
6 5t2o:A 293 49 0.1013 0.0546 0.3265 2.7
7 8bif:A 318 53 0.1076 0.0535 0.3208 3.5 8bif:B, 8bif:C, 8bif:D
8 5h02:A 252 94 0.1646 0.1032 0.2766 3.7 5gwx:A, 5hik:A, 5hil:A, 5him:A
9 7sn8:D 399 47 0.0886 0.0351 0.2979 6.2
10 6hv8:A 774 107 0.1709 0.0349 0.2523 6.9 6hv9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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