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BioLiP
>protein
SNAMDFSDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKN
SSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQIAAAHIKESQ
HLALQDIRDSIEELRYYRAHLLNL

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3tr8:A 184 184 1.0000 1.0000 1.0000 6.03e-138 3tr8:B
2 2igi:A 180 178 0.5924 0.6056 0.6124 7.63e-82 2igi:B, 7vh4:C
3 7va2:A 180 175 0.5978 0.6111 0.6286 3.88e-80 7va3:A, 7va3:B, 7va6:A, 7va6:B
4 6n6a:A 181 181 0.5815 0.5912 0.5912 8.06e-79 6n6c:A, 6n6d:A, 6n6e:A, 6n6f:A, 6n6g:A, 6n6h:A
5 5cy4:C 184 172 0.5598 0.5598 0.5988 2.15e-77 5cy4:A, 5cy4:B, 5cy4:D, 5cy4:E, 5cy4:F
6 6rk6:C 178 174 0.5054 0.5225 0.5345 5.03e-70 6rk6:A, 6rk6:B
7 6a4d:A 184 181 0.5054 0.5054 0.5138 9.20e-66 6a4d:B, 6a4e:A, 6a4e:C, 6a4f:A, 6a4f:B
8 6sty:A 198 173 0.4348 0.4040 0.4624 8.38e-55 6j7y:B, 6j7z:B, 6j80:B, 6n6i:A, 6n6i:B, 6n6j:A, 6n6j:B, 6n6k:A, 6n6k:B, 6rcl:A, 6rcn:A, 6sty:B, 6sty:E
9 7wik:C 196 173 0.4185 0.3929 0.4451 1.87e-47
10 6rcl:B 148 173 0.3478 0.4324 0.3699 4.85e-34 6j7y:A, 6j7z:A, 6j80:A, 6rcn:B
11 8a7e:C 1524 109 0.1304 0.0157 0.2202 0.17 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
12 8hgg:C 1484 109 0.1304 0.0162 0.2202 0.17 8hgg:D, 8hgh:A, 8hgh:B
13 7ufg:B 1182 109 0.1304 0.0203 0.2202 1.1 8d8o:B
14 7ufg:A 1151 109 0.1304 0.0209 0.2202 1.1
15 8f72:B 595 35 0.0707 0.0218 0.3714 3.4 8f5m:A, 8f5m:B, 8f72:A
16 3itj:B 319 32 0.0489 0.0282 0.2812 4.2 3d8x:A, 3d8x:B, 3itj:A, 3itj:C, 3itj:D
17 8skr:A 402 60 0.1087 0.0498 0.3333 4.6 3pd6:A, 3pd6:B, 3pd6:C, 3pdb:B, 3pdb:D, 8skr:C
18 6cd1:A 452 34 0.0652 0.0265 0.3529 5.0 6ccz:A, 6ccz:B, 6cd1:B, 6cd1:C, 6cd1:D, 6cd1:E, 6cd1:F, 6cd1:G, 6cd1:H
19 4pfy:A 539 34 0.0543 0.0186 0.2941 5.1 4pft:A, 4pft:B, 4pfy:B
20 8h18:A 172 28 0.0543 0.0581 0.3571 7.8 8h2f:A
21 4o4e:A 246 32 0.0598 0.0447 0.3438 9.1 4o4d:A, 4o4f:A, 8omi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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