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BioLiP
>protein
SNAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTM
VQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQ
LLKLCKEFEKPISRIEIILNRADTSRITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKVAPKSQLSKTIVDWALH
LN

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ea0:B 242 242 1.0000 1.0000 1.0000 4.26e-179 3ea0:A
2 1ion:A 243 239 0.2438 0.2428 0.2469 4.62e-15
3 4rz3:A 244 247 0.2769 0.2746 0.2713 6.49e-14 4rz3:B
4 1g3q:A 237 239 0.2438 0.2489 0.2469 1.96e-13 1g3r:A
5 4v02:A 244 177 0.1983 0.1967 0.2712 1.41e-06 4v02:B, 4v03:A, 4v03:B
6 6riq:C 254 225 0.1983 0.1890 0.2133 9.84e-05 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
7 2h9d:A 84 46 0.0744 0.2143 0.3913 0.039
8 3kjg:A 254 98 0.0950 0.0906 0.2347 0.32 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
9 5aup:I 241 198 0.1901 0.1909 0.2323 0.34 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
10 2hvr:A 319 214 0.1818 0.1379 0.2056 0.53 2hvq:A, 2hvr:B, 2hvs:A, 2hvs:B, 1s68:A
11 6eko:A 312 60 0.0826 0.0641 0.3333 0.64 6eko:B
12 6n9m:A 331 46 0.0579 0.0423 0.3043 0.87
13 2oze:A 284 128 0.1488 0.1268 0.2812 1.3
14 5tvk:B 242 135 0.1405 0.1405 0.2519 1.9 3k9g:A, 5tvk:A
15 6g2g:B 273 46 0.0702 0.0623 0.3696 4.3 6g2g:A
16 3ez2:B 394 186 0.1818 0.1117 0.2366 4.4 3ez2:A, 3ez6:A, 3ez6:B
17 4jlv:A 228 126 0.1240 0.1316 0.2381 4.6
18 6irw:A 494 55 0.0702 0.0344 0.3091 4.7 6irw:B
19 8cnr:A 548 36 0.0579 0.0255 0.3889 6.0 8cns:A
20 7ecr:A 460 27 0.0455 0.0239 0.4074 6.9 7ecr:B, 7ecr:C, 7ecs:A, 7ecs:B, 7ecs:C, 7ect:A, 7ect:B, 7ect:C
21 5uak:A 1139 139 0.1240 0.0263 0.2158 7.5 2bbs:B, 7svr:A, 8v81:A
22 6f8z:A 715 50 0.0537 0.0182 0.2600 9.0 6f8z:B, 6f8z:C, 6f90:A, 6f90:B, 6f90:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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