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BioLiP
>protein
SNAASRETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTM
LYNKFKNM

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2msr:B 88 88 1.0000 1.0000 1.0000 1.85e-60 2n3a:B, 3u88:C
2 5ksz:A 398 36 0.1705 0.0377 0.4167 0.65 5kso:A, 5ksp:A, 5ksp:B, 5ksy:A, 5kty:A, 5ku1:A
3 8jfh:E 79 67 0.2045 0.2278 0.2687 0.71 8jfn:B
4 4kpp:A 395 36 0.1364 0.0304 0.3333 1.7 4kpp:B
5 6cj6:D 166 58 0.1705 0.0904 0.2586 3.0 6cj6:A, 6cj6:B, 6cj6:C
6 4ct9:A 394 41 0.1591 0.0355 0.3415 4.2 4cta:A, 4cta:B, 4uoc:A, 4uoc:B, 4uuw:A, 4uux:A, 4uux:B
7 8dgp:A 236 39 0.1250 0.0466 0.2821 5.4 2br9:A, 7c8e:A, 7c8e:B, 8dgm:A, 8dgn:A, 8dgp:B, 8dgp:C, 8dgp:D, 8dp5:D, 6eih:A, 8q1s:B, 8q1s:A, 3ual:A, 3ubw:A, 7v9b:A
8 4py5:A 267 55 0.1818 0.0599 0.2909 7.8
9 1wow:A 245 34 0.1364 0.0490 0.3529 8.8 1wov:A, 1wov:B, 1wow:B, 1wox:A, 1wox:B
10 3jyf:A 336 21 0.1136 0.0298 0.4762 8.8 3jyf:B
11 6or5:A 2058 56 0.1932 0.0083 0.3036 9.6
12 3pr3:A 578 42 0.1250 0.0190 0.2619 10.0 3pr3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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