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BioLiP
>protein
SMVRYFYDTEFIEDGHTIELISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDLEEFLR
IDGTDSIELWAWVGAYDHVALCQLWGPMTALPPTVPRFTRELRQLWEDRGCPRMPPRPRDVHDALVDARDQLRRFRLITS
TDD

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4hec:B 163 163 1.0000 1.0000 1.0000 1.44e-118 4hec:A, 4hvj:A, 4hvj:B, 4oke:A, 4oke:B, 4okj:A, 4okj:B, 4okk:A, 4okk:B, 6s0m:B
2 7aih:S 150 68 0.1288 0.1400 0.3088 0.025 7am2:S, 7ane:S
3 5d6j:A 630 59 0.1104 0.0286 0.3051 0.15 5ey8:A, 5ey8:B, 5ey8:C, 5ey8:D, 5ey8:E, 5ey8:F, 5ey8:G, 5ey8:H, 5icr:A, 5icr:B, 5icr:C, 5icr:D
4 6pxk:K 429 105 0.1595 0.0606 0.2476 0.26 6pxk:I, 6pxk:A, 6pxk:C, 6pxk:E, 6pxl:B, 6pxl:F, 6pxl:G, 6pxl:K
5 5fv7:A 283 85 0.1534 0.0883 0.2941 0.29 5fv7:B
6 7aoi:A3 150 68 0.1043 0.1133 0.2500 1.7 6hiv:A3, 6hix:A3, 6yxx:A3, 6yxy:A3
7 8pjg:D 203 77 0.1227 0.0985 0.2597 1.9 1fyt:D, 1j8h:D, 6r0e:DDD
8 6xu6:DA 350 43 0.0798 0.0371 0.3023 2.6
9 6cmz:A 462 42 0.0798 0.0281 0.3095 3.4 6cmz:B, 6cmz:C, 6cmz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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