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BioLiP
>protein
SMVLLSSSWLPLNKDIEVEVVDYLPSSSVAPDLFALTLLRINDSSMKEKYDSMHEKMNAYAQIVPFDSELEIGYDGVFRD
APRSVRRVRRISATKLYLVDFGKIINYEKAKCFQLPKVFQSMPTRVSLCGLDGLTWSPVAIPSFDNIREVVKKWGQMENS
TLHAMACGFQGSINMINLFCGKSILADRLQRKGVCEYL

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8by5:A 198 198 1.0000 1.0000 1.0000 3.63e-149
2 6tg9:A 949 73 0.1111 0.0232 0.3014 0.55 6tg9:E, 6tga:A, 6tga:E
3 6hax:E 121 78 0.1061 0.1736 0.2692 2.5 5dkc:A, 5dkh:A, 5dkh:B, 8g1p:G, 8g1p:H, 6hax:A, 6hay:A, 6hay:E, 6haz:A, 6haz:B, 8qjt:A, 8qjt:B, 8qjt:C, 7s4e:A, 7s4e:E, 7z6l:A, 7z76:D, 7z77:D, 7z78:A, 7z78:B, 7z78:C
4 8t4e:B 551 119 0.1768 0.0635 0.2941 3.1 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B
5 2atx:A 186 88 0.1162 0.1237 0.2614 3.8 2atx:B
6 6je3:A 858 140 0.1414 0.0326 0.2000 5.5
7 6jfu:A 884 140 0.1414 0.0317 0.2000 5.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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