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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMTVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSLKAAFY
TAIQDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEESFLSFIQGDKVYQKHYDAIVILLGTGLRISELCGLTDKDLDFE
NRVIIVSHQLLRNTGVGYYIDVRKIPMNEEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGMFGRLVK
KYNKSHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMER

The query sequence (length=307) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6emy:B 316 313 0.9935 0.9652 0.9744 0.0 6emy:A, 6emz:A, 6emz:B, 6en0:A, 6en0:B, 6en1:A, 6en1:B, 6en2:A, 6en2:B
2 1aih:C 168 75 0.0912 0.1667 0.3733 3.39e-05
3 2a3v:B 320 188 0.1466 0.1406 0.2394 2.79e-04 2a3v:A, 2a3v:C, 2a3v:D
4 5dor:B 161 159 0.1368 0.2609 0.2642 0.003
5 5jjv:B 356 268 0.2085 0.1798 0.2388 0.41 5jjv:A, 5jk0:A, 5jk0:C, 5jk0:B, 5jk0:D
6 1dp5:A 329 42 0.0586 0.0547 0.4286 1.1 1dpj:A, 1fmu:A, 1fq4:A, 1fq5:A, 1fq6:A, 1fq7:A, 1fq8:A, 1g0v:A, 2jxr:A
7 7doo:A 260 93 0.0814 0.0962 0.2688 1.1 7ddm:A, 7doo:B, 7doo:C
8 3dcm:X 188 74 0.0749 0.1223 0.3108 1.8
9 8of9:A 254 69 0.0651 0.0787 0.2899 2.0 8rqu:B
10 1xez:A 663 43 0.0423 0.0196 0.3023 8.0 4gx7:A, 4gx7:B, 4gx7:D, 4gx7:C, 4gx7:E, 4gx7:F, 8jc7:A, 8jc7:B, 8jc7:C, 8jc7:D, 8jc7:E, 8jc7:F, 8jc7:G
11 5hud:D 457 39 0.0456 0.0306 0.3590 8.2 5huc:A, 5hud:A, 5hud:B, 5hud:C, 5hue:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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