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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMTVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLSDAKEWALRMKEKGLSYKTINNDKRSLKAAFY
TAIQDDCIRKNPFDFQLSDVLDDDTEPKVPLTPAQEESFLSFIQGDKVYQKHYDAIVILLGTGLKISELCGLTDKDLDFE
NRVIIVSHQLLRNTGVGYYIDEPKTSGVRKIPMNEEVYQAFQRVIKNRKGAKPFIIDGYANFLFLKQNGYPMTAVDYGGM
FGRLVKKYNKSHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNYYAHATFDSARAEMERL

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6emy:B 316 314 0.9904 0.9842 0.9904 0.0 6emy:A, 6emz:A, 6emz:B, 6en0:A, 6en0:B, 6en1:A, 6en1:B, 6en2:A, 6en2:B
2 1aih:C 168 75 0.0892 0.1667 0.3733 3.38e-05
3 2a3v:B 320 60 0.0669 0.0656 0.3500 0.002 2a3v:A, 2a3v:C, 2a3v:D
4 5dor:B 161 160 0.1369 0.2671 0.2687 0.005
5 5jjv:B 356 278 0.2102 0.1854 0.2374 0.86 5jjv:A, 5jk0:A, 5jk0:C, 5jk0:B, 5jk0:D
6 1dp5:A 329 42 0.0573 0.0547 0.4286 1.1 1dpj:A, 1fmu:A, 1fq4:A, 1fq5:A, 1fq6:A, 1fq7:A, 1fq8:A, 1g0v:A, 2jxr:A
7 8of9:A 254 69 0.0637 0.0787 0.2899 2.0 8rqu:B
8 3dcm:X 188 74 0.0732 0.1223 0.3108 2.0
9 4b56:A 816 82 0.0732 0.0282 0.2805 2.9 6aek:A, 6ael:A, 4b56:B
10 6wev:AbA 817 58 0.0573 0.0220 0.3103 2.9 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB
11 7doo:A 260 93 0.0764 0.0923 0.2581 3.1 7ddm:A, 7doo:B, 7doo:C
12 4xiy:A 328 70 0.0637 0.0610 0.2857 3.2 4xiy:B, 4xiy:C, 4xiy:D
13 6xkd:A 679 82 0.0732 0.0339 0.2805 3.3
14 4gtw:A 706 84 0.0732 0.0326 0.2738 3.5 4gtw:B, 4gtx:A, 4gtx:B, 4gty:A, 4gty:B, 4gtz:A, 4gtz:B, 6xkd:B
15 1chm:A 401 72 0.0669 0.0524 0.2917 9.2 1chm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218