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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMTFGQALESLKRGHLVARKGWNGKGMFIFMRPEDSLPTNMIVNQVKSLPESFKRWVANNHGDSETDRIKFTAYLCMKAA
DGTIVNGWLASQTDMLANDWVIVE

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8kbj:B 104 104 1.0000 1.0000 1.0000 3.36e-76 8kbj:A, 8kbj:C, 8kbj:D, 8kbk:A, 8kbk:C, 8kbk:D, 8kbk:B, 8kbl:A, 8kbm:A, 8kbm:B, 8wjc:A, 8wjc:D, 8wjc:B, 8wjc:C
2 8wjd:A 101 103 0.5481 0.5644 0.5534 4.78e-36
3 8smg:B 76 102 0.3750 0.5132 0.3824 1.59e-15 8smf:C, 8smf:H
4 8smf:E 84 102 0.3654 0.4524 0.3725 6.02e-15 8smf:D, 8smf:F, 8smf:B, 8smf:A, 8smf:G
5 1y7i:B 262 37 0.1154 0.0458 0.3243 0.36 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
6 2zoz:B 181 60 0.1731 0.0994 0.3000 0.38 2yve:A, 2yve:B, 2yvh:A, 2yvh:D, 2yvh:B, 2yvh:C, 2zoz:A
7 4kx7:A 875 53 0.1442 0.0171 0.2830 0.61 4kx8:A, 4kx9:A, 4kxa:A, 4kxb:A, 4kxc:A, 4kxd:A
8 3j8g:X 418 16 0.0962 0.0239 0.6250 0.93
9 2hk6:A 309 78 0.1923 0.0647 0.2564 1.6 1c1h:A, 1c9e:A, 1ld3:A, 3m4z:A, 2q2n:A, 2q2o:A, 2q3j:A
10 5dn8:A 405 24 0.1058 0.0272 0.4583 2.2
11 6bej:E 201 26 0.1154 0.0597 0.4615 3.0 6bej:A
12 7otj:A 438 52 0.1635 0.0388 0.3269 3.4 7otj:B
13 1e3a:B 560 97 0.2500 0.0464 0.2680 4.5 1ai4:B, 1ai5:B, 1ai6:B, 1ai7:B, 1ajn:B, 1ajp:B, 1ajq:B, 1fxh:B, 1fxv:B, 1gk9:B, 1gkf:B, 1gm7:B, 1gm8:B, 1gm9:B, 1h2g:B, 1jx9:B, 1k5q:B, 1k5s:B, 1k7d:B, 1kec:B, 1pnk:B, 1pnl:B, 1pnm:B
14 4ij6:A 207 57 0.1538 0.0773 0.2807 5.3 4ij6:B
15 6g0b:A 393 58 0.1442 0.0382 0.2586 5.9 6g09:A, 6g0n:A
16 4krh:A 430 61 0.1731 0.0419 0.2951 6.4 4krh:B, 4kri:A, 4kri:B, 4kri:C
17 1u02:A 229 47 0.1058 0.0480 0.2340 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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