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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMTFGQALESLKRGHLVARKGWNGKGMFIFMRPEDSLPTNMIVNQVKSLPESFKRWVANNHGDSETDRIKFTAYLCMKAA
DGTIVNGWLASQTDMLANDWVIV

The query sequence (length=103) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8kbj:B 104 103 1.0000 0.9904 1.0000 2.46e-75 8kbj:A, 8kbj:C, 8kbj:D, 8kbk:A, 8kbk:C, 8kbk:D, 8kbk:B, 8kbl:A, 8kbm:A, 8kbm:B, 8wjc:A, 8wjc:D, 8wjc:B, 8wjc:C
2 8wjd:A 101 102 0.5437 0.5545 0.5490 3.13e-35
3 8smg:B 76 102 0.3786 0.5132 0.3824 1.77e-15 8smf:C, 8smf:H
4 8smf:E 84 102 0.3689 0.4524 0.3725 5.39e-15 8smf:D, 8smf:F, 8smf:B, 8smf:A, 8smf:G
5 1y7i:B 262 37 0.1165 0.0458 0.3243 0.33 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
6 2zoz:B 181 60 0.1748 0.0994 0.3000 0.40 2yve:A, 2yve:B, 2yvh:A, 2yvh:D, 2yvh:B, 2yvh:C, 2zoz:A
7 4kx7:A 875 53 0.1456 0.0171 0.2830 0.58 4kx8:A, 4kx9:A, 4kxa:A, 4kxb:A, 4kxc:A, 4kxd:A
8 3j8g:X 418 16 0.0971 0.0239 0.6250 0.90
9 2hk6:A 309 78 0.1942 0.0647 0.2564 1.5 1c1h:A, 1c9e:A, 1ld3:A, 3m4z:A, 2q2n:A, 2q2o:A, 2q3j:A
10 5dn8:A 405 24 0.1068 0.0272 0.4583 2.2
11 6bej:E 201 26 0.1165 0.0597 0.4615 2.8 6bej:A
12 7otj:A 438 52 0.1650 0.0388 0.3269 3.4 7otj:B
13 1e3a:B 560 97 0.2524 0.0464 0.2680 3.9 1ai4:B, 1ai5:B, 1ai6:B, 1ai7:B, 1ajn:B, 1ajp:B, 1ajq:B, 1fxh:B, 1fxv:B, 1gk9:B, 1gkf:B, 1gm7:B, 1gm8:B, 1gm9:B, 1h2g:B, 1jx9:B, 1k5q:B, 1k5s:B, 1k7d:B, 1kec:B, 1pnk:B, 1pnl:B, 1pnm:B
14 4ij6:A 207 57 0.1553 0.0773 0.2807 4.6 4ij6:B
15 4krh:A 430 61 0.1748 0.0419 0.2951 5.5 4krh:B, 4kri:A, 4kri:B, 4kri:C
16 6g0b:A 393 58 0.1456 0.0382 0.2586 5.7 6g09:A, 6g0n:A
17 1u02:A 229 47 0.1068 0.0480 0.2340 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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