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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMTFGQALESLKRGHLVARKGWNGKGMFIFMRPEDSLPTNMIVNQVKSLPESFKRWVANNHDRIKFTAYLCMKAADGTIV
NGWLASQTDMLANDWVIVE

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8kbj:B 104 104 1.0000 0.9519 0.9519 8.91e-70 8kbj:A, 8kbj:C, 8kbj:D, 8kbk:A, 8kbk:C, 8kbk:D, 8kbk:B, 8kbl:A, 8kbm:A, 8kbm:B, 8wjc:A, 8wjc:D, 8wjc:B, 8wjc:C
2 8wjd:A 101 98 0.5657 0.5545 0.5714 1.71e-37
3 8smg:B 76 97 0.3939 0.5132 0.4021 2.60e-16 8smf:C, 8smf:H
4 8smf:E 84 97 0.3838 0.4524 0.3918 8.50e-16 8smf:D, 8smf:F, 8smf:B, 8smf:A, 8smf:G
5 3j8g:X 418 16 0.1010 0.0239 0.6250 0.82
6 5a8w:D 549 60 0.1515 0.0273 0.2500 0.95 5a8r:A, 5a8r:D, 5a8r:G, 5a8r:J, 5a8w:A, 5a8w:G, 5a8w:J
7 5dn8:A 405 24 0.1111 0.0272 0.4583 2.0
8 7oq6:A 399 50 0.1717 0.0426 0.3400 2.2 7oq6:B
9 4ij6:A 207 62 0.1717 0.0821 0.2742 3.9 4ij6:B
10 4kx7:A 875 50 0.1414 0.0160 0.2800 5.9 4kx8:A, 4kx9:A, 4kxa:A, 4kxb:A, 4kxc:A, 4kxd:A
11 6bej:E 201 24 0.1111 0.0547 0.4583 6.4 6bej:A
12 1y7i:B 262 36 0.1212 0.0458 0.3333 7.6 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
13 2hk6:A 309 73 0.1818 0.0583 0.2466 9.4 1c1h:A, 1c9e:A, 1ld3:A, 3m4z:A, 2q2n:A, 2q2o:A, 2q3j:A
14 3ecq:B 1347 53 0.1616 0.0119 0.3019 9.6 5a55:A, 5a56:A, 5a57:A, 5a58:A, 5a59:A, 5a5a:A, 3ecq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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