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BioLiP
>protein
SMSVPQTKAELLLAIDKNFSKLISYLNTIPPEITSDKSMDGHAKGTEMSVRDLVSYLLGWNALVVKWIASDAKGLPVDFP
ETGYKWNQLGLLAQKFYSDYSELSYELLVAELQTVKNEIVNLINDRTDDILYGRPWYTKWTMGRMISFNTSSPYANANGR
LRKWAKNNNISL

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5cof:A 172 172 1.0000 1.0000 1.0000 2.85e-126
2 7mtl:A 168 165 0.5116 0.5238 0.5333 3.86e-60 7mtl:B
3 2fyf:A 368 56 0.1337 0.0625 0.4107 2.7 2fyf:B, 3vom:A, 3vom:B
4 8ppk:j 174 42 0.0756 0.0747 0.3095 5.2
5 1af0:A 470 75 0.1453 0.0532 0.3333 10.0 5d7w:A, 4i35:A, 1sat:A, 1smp:A, 1srp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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