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BioLiP
>protein
SMSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKEDLAEYYEEAGIHPP

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4d4o:A 414 76 1.0000 0.1836 1.0000 4.78e-54 4d4o:C, 4d4p:A, 4d4p:C, 4d4p:G, 4d4p:H, 4x33:A, 4x33:B, 1yop:A, 1yws:A
2 2jr7:A 84 58 0.3947 0.3571 0.5172 2.10e-18
3 1wge:A 83 58 0.3947 0.3614 0.5172 2.28e-18
4 2l6l:A 155 54 0.1974 0.0968 0.2778 0.011
5 8xq7:A 1041 49 0.1974 0.0144 0.3061 0.18 8xq7:B
6 1iyb:A 208 82 0.2895 0.1058 0.2683 0.45 1iyb:B
7 7k9s:A 211 66 0.2500 0.0900 0.2879 0.79 7k9s:B, 7k9s:C, 7k9s:D, 7k9s:E, 7k9s:F, 7k9u:A, 7k9u:B, 7k9v:A, 7k9v:B, 7k9w:A, 7k9w:B
8 1ek3:A 114 36 0.1711 0.1140 0.3611 2.2
9 4cns:D 479 37 0.1711 0.0271 0.3514 2.9 4cns:A, 4cns:B, 4cns:C
10 4b1m:A 165 10 0.1184 0.0545 0.9000 4.2 4b1l:A, 4b1m:B, 4b1m:C
11 6ras:I 433 27 0.1316 0.0231 0.3704 5.3 6rar:I, 6rau:I, 6rce:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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