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BioLiP
>protein
SMSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEEKVAVCPSCSLMIDVVFDKEDLAEYYEEAGIHP

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4d4o:A 414 75 1.0000 0.1787 0.9867 7.92e-51 4d4o:C, 4d4p:A, 4d4p:C, 4d4p:G, 4d4p:H, 4x33:A, 4x33:B, 1yop:A, 1yws:A
2 1wge:A 83 58 0.3919 0.3494 0.5000 1.16e-15
3 2jr7:A 84 58 0.3919 0.3452 0.5000 1.45e-15
4 2l6l:A 155 51 0.1757 0.0839 0.2549 0.001
5 1iyb:A 208 81 0.2838 0.1010 0.2593 0.54 1iyb:B
6 4k49:C 136 33 0.1351 0.0735 0.3030 3.0 4k49:B, 4k49:D, 4k49:A, 4k4a:A, 4k4a:B, 4k4a:D, 4k4a:C, 4k4b:A, 4k4b:B, 4k4b:C, 4k4b:D, 4k4b:E, 4k4b:F, 4k4b:G, 4k4b:H
7 4b1m:A 165 10 0.1216 0.0545 0.9000 4.0 4b1l:A, 4b1m:B, 4b1m:C
8 8xq7:A 1041 29 0.1351 0.0096 0.3448 7.9 8xq7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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