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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SMSNNSYLRAKVFETEHGVCQLCNVNAQELFLRLRDAPKSQRKNLLYATWTSKLPLEQLNEMIRNPGEGHFWQVDHIKPV
YGGGGQCSLDNLQTLCTVCHKERTARQAKERSQVRRQ

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mkw:A 119 117 1.0000 0.9832 1.0000 7.22e-87 5mkw:B
2 5h0m:A 92 33 0.1282 0.1630 0.4545 0.002 5h0o:A
3 6ghc:B 286 41 0.1282 0.0524 0.3659 0.25 6ghc:A, 6r64:A, 6r64:B, 6t21:A, 6t21:B, 6t22:A, 6t22:B
4 4g6f:B 235 51 0.1368 0.0681 0.3137 0.84 4g6f:H, 5ghw:H, 5iq7:H, 5iq9:A, 5iq9:H, 4u6g:H, 4u6g:A, 6vpx:H, 6vpx:K, 6vpx:M
5 7tj3:A 164 66 0.1538 0.1098 0.2727 1.7
6 4oge:A 977 35 0.1026 0.0123 0.3429 1.9 4ogc:A
7 2y88:A 244 24 0.0855 0.0410 0.4167 2.0 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
8 3nnf:A 318 45 0.1026 0.0377 0.2667 2.3 3nnl:A
9 7twa:B 223 41 0.1282 0.0673 0.3659 3.3 7twa:A, 7twa:C, 7twa:D
10 9b59:C 377 43 0.1368 0.0424 0.3721 3.6 9b5a:C, 9b5b:C
11 8d2k:A 1105 49 0.1368 0.0145 0.3265 3.7 8d2l:A, 8d2n:A, 8d2p:A
12 8d2q:A 906 49 0.1368 0.0177 0.3265 4.2
13 3tj9:A 155 34 0.0855 0.0645 0.2941 8.9 3ny0:B, 3tj9:B, 3tj9:C, 3tj9:D
14 4ltu:A 106 48 0.1111 0.1226 0.2708 9.4 4ltu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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