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BioLiP
>protein
SMSMKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRSARGVLRGLHYQIRQAQGKLVRATL
GEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWP
LQDAPLLSEKDRQGKAFADADCFP

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ixh:A 184 184 0.9946 0.9946 0.9946 7.51e-138 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
2 1dzt:A 183 169 0.6033 0.6066 0.6568 5.04e-82 1dzt:B
3 6ndr:A 188 183 0.5598 0.5479 0.5628 2.88e-69 6ndr:B
4 7pvi:AAA 199 176 0.5326 0.4925 0.5568 1.06e-63 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
5 1epz:A 183 178 0.4783 0.4809 0.4944 1.28e-58
6 6c46:A 183 180 0.5054 0.5082 0.5167 4.69e-58 6c46:D
7 3ryk:A 175 172 0.4620 0.4857 0.4942 1.87e-54 3ryk:B
8 2ixc:A 198 179 0.3913 0.3636 0.4022 7.70e-41 2ixc:B, 2ixc:C, 2ixc:D
9 1oi6:A 202 179 0.3478 0.3168 0.3575 1.42e-35 1oi6:B
10 7pwh:AAA 203 174 0.3804 0.3448 0.4023 5.81e-35
11 5buv:A 174 181 0.3261 0.3448 0.3315 1.04e-28 5buv:B
12 4hn1:C 201 165 0.3152 0.2886 0.3515 2.84e-27 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
13 8dcl:A 185 161 0.2663 0.2649 0.3043 4.45e-23 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
14 8dco:B 181 161 0.2609 0.2652 0.2981 1.18e-19 8db5:A, 8db5:B, 8db5:C, 8db5:D, 8db5:E, 8db5:F, 8db5:G, 8db5:H, 8dco:A
15 7m15:D 181 161 0.2554 0.2597 0.2919 3.95e-18 7an4:A, 7an4:B, 7an4:D, 7m14:A, 7m14:B, 7m14:C, 7m14:D, 7m14:E, 7m14:F, 7m15:A, 7m15:B, 7m15:C, 7m15:E, 7m15:F
16 2ixl:C 197 177 0.3315 0.3096 0.3446 5.29e-18 2ixl:A, 2ixl:B, 2ixl:D, 1nyw:A, 1nyw:B, 1nzc:A, 1nzc:B, 1nzc:C, 1nzc:D
17 1jvz:A 152 50 0.0870 0.1053 0.3200 0.10
18 5u8t:2 583 66 0.1141 0.0360 0.3182 0.98
19 3dje:B 437 74 0.1196 0.0503 0.2973 1.1 3djd:A, 3djd:B, 3dje:A
20 1wf3:A 296 92 0.1304 0.0811 0.2609 1.2
21 6a0q:B 315 42 0.0761 0.0444 0.3333 2.1
22 7sgx:D 208 35 0.0815 0.0721 0.4286 3.1 7n4p:A, 7scm:A, 7scm:B, 7sgx:A, 7sgx:B, 7sgx:C
23 6khu:A 131 40 0.0815 0.1145 0.3750 4.4
24 7pt6:2 629 71 0.1141 0.0334 0.2958 7.3 5bk4:2, 5bk4:A, 6eyc:2, 6f0l:A, 6f0l:2, 3ja8:2, 7p30:2, 7p30:A, 7p5z:2, 7p5z:A, 7pt6:B, 7pt7:2, 7pt7:B, 6rqc:2, 6sko:2, 5u8s:2, 7v3u:2, 7v3u:B, 7v3v:2, 7v3v:B, 5v8f:2, 8w7m:2, 7w8g:2, 7w8g:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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