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BioLiP
>protein
SMRKTIERLLNSELSSNSIAVRTGVSQAVISKLRNGKKELGNLTLNSAEKLFEYQKEMEKVDTWIVYRGRTADMNKSYIA
EGSTYEEVYNNFVDKYGYDVLDEDIYEIQLLKKNGENLDDYDVDSDGINNYDKLDEFRESDYVDLEDYDYRELFENSSSQ
VYYH

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jfu:B 171 164 1.0000 0.9591 1.0000 4.65e-116 8jfr:B, 8jfr:D, 8jfr:A, 8jfr:C, 8jft:C, 8jfu:D, 8jfu:A, 8jg9:C, 8jg9:F
2 8jfu:C 140 164 0.8110 0.9500 0.8110 1.05e-86
3 4edg:A 321 67 0.1402 0.0717 0.3433 1.1 4edk:A, 4edr:A, 4edt:A, 4edv:A, 4ee1:A
4 8fpj:A 1345 79 0.1402 0.0171 0.2911 2.8
5 7mvv:A 1542 55 0.1098 0.0117 0.3273 5.6 4knh:B, 7tbi:I1, 7tbi:I2, 7tbj:I1, 7tbj:I2, 7tbj:I3, 7tbj:I4, 7tbj:I5, 7tbk:I1, 7tbk:I2, 7tbk:I3, 7tbk:I4, 7tbk:I5, 7tbl:I1, 7tbl:I2, 7tbl:I3, 7tbl:I4, 7tbl:I5, 7tbm:I1, 7tbm:I2, 7tbm:I3, 7tbm:I4, 7tbm:I5
6 7ok0:B 1109 53 0.1220 0.0180 0.3774 6.1 7oq4:B, 7oqy:B
7 1ko7:A 285 42 0.0854 0.0491 0.3333 6.5 1ko7:B
8 2xmo:A 409 83 0.1220 0.0489 0.2410 7.1 2xmo:B
9 6lty:A 78 28 0.0854 0.1795 0.5000 8.5 6lty:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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