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BioLiP
>protein
SMRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bcv:J 43 43 1.0000 1.0000 1.0000 1.61e-25 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
2 5l8r:J 42 42 0.8605 0.8810 0.8810 7.54e-22 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
3 8htu:J 41 40 0.7442 0.7805 0.8000 3.62e-18 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
4 7yca:J 41 40 0.6047 0.6341 0.6500 5.96e-15
5 7d0j:J 41 41 0.6279 0.6585 0.6585 4.17e-14 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
6 7a4p:J 41 37 0.5814 0.6098 0.6757 1.33e-11 6zzx:J, 6zzy:J
7 8cmo:J 40 39 0.5349 0.5750 0.5897 5.40e-11
8 6kif:J 41 40 0.5349 0.5610 0.5750 6.35e-11 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
9 6igz:J 41 41 0.4884 0.5122 0.5122 1.12e-10
10 6l4u:J 41 41 0.5116 0.5366 0.5366 2.89e-10
11 7blz:J 38 35 0.4884 0.5526 0.6000 4.15e-10 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
12 6qph:J 41 41 0.5581 0.5854 0.5854 5.77e-10 6rhz:J, 6sl5:J, 6yxr:J
13 4fe1:J 41 40 0.4884 0.5122 0.5250 1.71e-09 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
14 8wm6:J 42 34 0.4651 0.4762 0.5882 3.35e-08 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
15 7dr0:J 37 34 0.5116 0.5946 0.6471 2.55e-07 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
16 6k61:J 45 34 0.4186 0.4000 0.5294 3.49e-07 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
17 7coy:aJ 35 34 0.3953 0.4857 0.5000 5.26e-07 7coy:bJ, 7coy:cJ
18 7y5e:JN 38 33 0.4419 0.5000 0.5758 5.72e-07 7y5e:J2, 7y7a:J7, 7y7a:Jo
19 6vpv:J 39 39 0.4651 0.5128 0.5128 3.12e-06 6vpv:j, 6vpv:8
20 4l6v:F 125 40 0.3953 0.1360 0.4250 0.002 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
21 7s3d:J 41 34 0.3023 0.3171 0.3824 0.002 7s3d:S, 7s3d:j
22 7qco:q 37 31 0.3721 0.4324 0.5161 0.018 7qco:j
23 8jw0:j 70 40 0.4186 0.2571 0.4500 0.15
24 8jjr:j 99 39 0.4186 0.1818 0.4615 0.82
25 8jze:j 98 36 0.3488 0.1531 0.4167 0.90 8jzf:j
26 8eg0:A 230 15 0.2093 0.0391 0.6000 4.1 3ckk:A, 8cth:A, 8cti:A, 8d59:A, 8d5b:A, 8d9l:A, 7ogj:A, 7ogj:B, 7pl1:A
27 7sf2:A 586 29 0.2558 0.0188 0.3793 4.2 7sf2:B, 7sf2:C, 7sf2:D, 7sf2:E, 7sf2:F
28 5nqv:C 190 15 0.2326 0.0526 0.6667 7.2 5nqv:A, 5nqv:B, 5nqv:D
29 8xvg:L 3485 38 0.2791 0.0034 0.3158 7.9 8xvv:L
30 7ktr:A 3042 38 0.2791 0.0039 0.3158 8.1
31 4v1t:B 753 16 0.2093 0.0120 0.5625 8.9 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B
32 4blo:L 275 36 0.3023 0.0473 0.3611 9.0 4blo:A, 4blo:B, 4blo:C, 4blo:H, 4blo:D, 4blo:E, 4blo:F, 4blo:G, 4blo:I, 4blo:J, 4blo:K, 5muv:A, 5muv:L, 5muv:B, 5muv:I, 5muv:J, 5muv:K, 5muw:A, 5muw:L, 5muw:B, 5muw:I, 5muw:J, 5muw:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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