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BioLiP
>protein
SMPALVIKTNAKFTEEEKSKATEELGNIVSKVLGKPISYVMVTLEDGVAVRFGGSDEKAAFMSLMSILNRAVNKRASAAL
TKWFTDHGFQGDRIYIVFN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ur2:B 99 99 1.0000 1.0000 1.0000 5.23e-70
2 3gac:E 115 99 0.3333 0.2870 0.3333 4.86e-14
3 8dq6:B 109 99 0.3333 0.3028 0.3333 1.34e-09 8dq6:A, 8dq6:C
4 4p7m:A 104 96 0.2626 0.2500 0.2708 2.64e-09 4p7s:A, 4p7s:B, 4p7s:C
5 1mfi:A 114 102 0.2929 0.2544 0.2843 6.07e-05 1mfi:C, 1mfi:B
6 1gcz:A 118 102 0.3030 0.2542 0.2941 1.22e-04 6b1c:A, 6b1c:C, 6b1c:B, 6b1k:A, 6b1k:C, 6b1k:B, 6b2c:A, 6b2c:B, 5b4o:A, 5b4o:B, 5b4o:C, 3b9s:A, 3b9s:B, 3b9s:C, 9bnq:A, 9bnq:B, 9bnq:C, 9bnr:A, 9bnr:B, 9bnr:C, 1ca7:A, 1ca7:C, 1ca7:B, 8ca0:A, 6cb5:A, 6cb5:C, 6cb5:B, 6cbf:A, 6cbf:C, 6cbf:B, 6cbg:A, 6cbg:B, 6cbg:C, 6cbh:B, 6cbh:C, 3dji:B, 7e45:B, 7e45:C, 7e47:B, 7e47:C, 7e49:A, 7e49:B, 7e4a:A, 7e4a:B, 7e4a:C, 7e4b:A, 7e4b:B, 7e4c:A, 7e4c:B, 4f2k:A, 4f2k:B, 4f2k:C, 6fve:A, 6fve:C, 6fve:B, 6fvh:A, 6fvh:B, 6fvh:C, 1gcz:C, 1gcz:B, 4grq:C, 4grr:B, 3hof:B, 3hof:C, 5hvs:A, 5hvs:C, 5hvs:B, 5hvt:A, 5hvt:B, 5hvt:C, 3ijg:C, 3ijj:A, 3ijj:C, 3ijj:B, 5j7p:A, 5j7p:C, 5j7p:B, 5j7q:A, 3jsf:A, 3jsf:B, 3jsf:C, 3jsg:A, 3jsg:B, 3jsg:C, 3jtu:A, 3jtu:B, 3jtu:C, 4k9g:A, 4k9g:B, 4k9g:C, 3l5p:A, 3l5r:A, 3l5r:C, 3l5s:A, 3l5t:A, 3l5u:A, 3l5u:C, 3l5u:B, 1ljt:A, 1ljt:B, 1ljt:C, 2ooh:B, 2ooh:C, 2ooh:A, 2oow:A, 2oow:C, 2ooz:A, 2ooz:B, 2ooz:C, 4osf:A, 4osf:C, 4osf:B, 4oyq:A, 4oyq:B, 4oyq:C, 4p01:A, 4p01:B, 6peg:E, 6peg:F, 4pkk:A, 4pkk:B, 4pkk:C, 4plu:A, 4plu:B, 4plu:C, 3smb:A, 3smb:B, 3smb:C, 3smc:A, 3smc:B, 3smc:C, 8son:A, 8son:B, 8spn:C, 4trf:A, 4trf:B, 4trf:C, 8tt9:A, 8tt9:C, 8tt9:B, 3u18:A, 3wnr:A, 3wnr:B, 3wnr:C, 3wns:A, 3wns:B, 3wns:C, 3wnt:A, 3wnt:B, 3wnt:C, 4wr8:B, 4wr8:C, 4wr8:E, 4wr8:F, 4wr8:H, 4wr8:I, 4wr8:K, 4wr8:L, 4wr8:N, 4wr8:O, 4wr8:Q, 4wr8:R, 4wrb:A, 4wrb:C, 5xej:A, 7xtx:B
7 8dbb:A 117 76 0.2727 0.2308 0.3553 0.003 6c5f:B, 8dbb:B, 8dbb:C, 3kan:A, 3kan:B, 3kan:C, 8vg5:A, 8vg8:A
8 3ker:A 117 73 0.2222 0.1880 0.3014 0.69 3ker:B, 3ker:C, 3ker:D
9 2dfv:A 346 37 0.1616 0.0462 0.4324 1.7 2d8a:A, 2dfv:B, 2dfv:C
10 8smr:G 312 40 0.1616 0.0513 0.4000 2.4
11 4jqd:E 97 43 0.1616 0.1649 0.3721 2.6 4jcx:A, 4jcx:B, 4jcy:A, 4jcy:B, 4jqd:F, 4jqd:A, 4jqd:B
12 6d73:A 1227 39 0.1313 0.0106 0.3333 3.6 6d73:C, 6pkx:B, 6pkx:D
13 6drj:A 1266 39 0.1313 0.0103 0.3333 3.6 6d73:B, 6d73:D, 6drj:B, 6drj:C, 6drj:D
14 1kno:E 214 55 0.1616 0.0748 0.2909 4.1 1kno:A, 1kno:C
15 4a6a:A 189 93 0.2222 0.1164 0.2366 4.4 4a6a:E, 4a6a:B, 4a6a:D, 4a6a:C, 4a6a:F, 4a6a:G, 4a6a:K, 4a6a:H, 4a6a:J, 4a6a:I, 4a6a:L, 2qxx:A, 2qxx:B
16 1c12:A 214 30 0.1313 0.0607 0.4333 6.4 3g5v:A, 3g5y:A, 5xqw:L
17 4doz:A 557 38 0.1313 0.0233 0.3421 7.1 3ung:C, 3ur3:C
18 4txa:A 367 29 0.1212 0.0327 0.4138 7.2 5f5f:A, 5f5f:G, 5f5f:C, 5f5f:E, 5f5h:A, 5f5h:B, 4qi2:A, 4qi2:B, 4qi2:C, 4qi2:D, 4qik:A, 4qik:B, 4qil:B, 4qil:A, 6tqa:A, 6tqa:B, 6tqa:C, 6tqa:D, 6tqb:A, 4ywq:A, 4zld:A
19 7dlk:A 363 45 0.1313 0.0358 0.2889 7.7 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
20 7cu5:A 230 55 0.1616 0.0696 0.2909 8.0 7cu5:B
21 7mex:A 1737 75 0.2020 0.0115 0.2667 8.3 6kgi:B, 7mey:A, 3nih:A, 3nii:A, 3nij:A, 3nik:B, 3nik:D, 3nik:A, 3nik:F, 3nil:D, 3nil:A, 3nil:B, 3nil:F, 3nim:B, 3nim:F, 3nim:A, 3nim:D, 3nin:A, 3nin:B, 3nis:A, 3nis:B, 3nis:D, 3nis:F, 3nit:A
22 7yqq:B 437 27 0.1111 0.0252 0.4074 8.4
23 8sw0:A 864 28 0.1212 0.0139 0.4286 8.5 8sw1:A
24 6pcm:A 793 47 0.1717 0.0214 0.3617 8.6 6pcm:B
25 7yqq:A 464 27 0.1111 0.0237 0.4074 8.7 7yqr:A, 7yqr:B
26 5a0y:A 548 76 0.1919 0.0347 0.2500 8.9 5a0y:D, 5a8k:A, 5a8k:D, 7b2h:A, 7b2h:D, 5g0r:A, 5g0r:D, 1hbm:A, 1hbm:D, 1hbn:A, 1hbn:D, 1hbo:A, 1hbo:D, 1hbu:A, 1hbu:D, 3m1v:A, 3m1v:D, 3m2r:A, 3m2r:D, 3m2u:A, 3m2u:D, 3m2v:A, 3m2v:D, 3m30:A, 3m30:D, 3m32:A, 3m32:D, 1mro:A, 1mro:D, 3pot:A, 3pot:D, 7suc:A, 7suc:a, 7sxm:A, 7sxm:D
27 6bzw:H 218 31 0.1212 0.0550 0.3871 9.2 6bzu:D, 6bzu:B, 6bzu:F, 6bzu:H, 6bzv:B, 6bzv:D, 6bzv:F, 6bzv:H, 6bzw:D, 6bzw:B, 6bzw:F, 7dk7:f, 4g6a:D, 4g6a:L
28 2x5r:A 124 42 0.1414 0.1129 0.3333 9.4
29 8czq:A 655 47 0.1717 0.0260 0.3617 9.8
30 6cq2:A 688 47 0.1717 0.0247 0.3617 9.8 6cqi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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