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BioLiP
>protein
SMNRQEISDLCVKSLEGRMVGTEAQNIENGNAFYRYFFTNFPDLRVYFKGAEKYTADDVKKSERFDKQGQRILLACHLLA
NVYTNEEVFKGYVRETINRHRIYKMDPALWMAFFTVFTGYLESVGSLNDQQKAAWMALGKEFNAESQTHLKNSNLPHV

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wtg:A 158 158 1.0000 1.0000 1.0000 5.95e-120 2wth:A, 2wth:B
2 1ash:A 147 139 0.3734 0.4014 0.4245 2.95e-36
3 1h97:A 147 117 0.1962 0.2109 0.2650 0.002 1h97:B, 1kfr:A
4 1dm1:A 146 110 0.1582 0.1712 0.2273 0.033 2fal:A, 2fam:A, 1mba:A, 3mba:A, 4mba:A, 5mba:A
5 6q6p:B 157 121 0.1835 0.1847 0.2397 0.075 6q6p:A
6 4u8u:D 141 127 0.1772 0.1986 0.2205 0.17 4u8u:H, 4u8u:L, 4u8u:S, 4u8u:W, 4u8u:a, 4u8u:h, 4u8u:l, 4u8u:p, 4wch:D
7 7kpr:A 403 71 0.1139 0.0447 0.2535 0.27 7kpr:B, 7l4i:A, 7l4i:B, 7l4j:A, 7l4j:B, 7n0z:A, 7n0z:B
8 6rxt:UM 729 31 0.0886 0.0192 0.4516 0.83 5oql:J, 6rxu:UM, 6rxv:UM, 6rxx:UM
9 4c5y:A 436 39 0.0696 0.0252 0.2821 0.95 4c5y:B
10 8oup:B 151 106 0.1203 0.1258 0.1792 1.1 8oup:A, 8oup:C, 8oup:D
11 6a91:A 1323 48 0.1013 0.0121 0.3333 2.7 6a95:A, 6nt3:A, 6nt4:A
12 6g0a:A 1104 136 0.2595 0.0371 0.3015 3.6 8b67:A, 6fwk:B, 6i8a:B, 7r3y:B
13 2c0k:A 150 72 0.1203 0.1267 0.2639 4.2 2c0k:B
14 2qjo:B 336 37 0.0823 0.0387 0.3514 5.0 2qjo:A, 2qjo:C
15 5whu:H 124 31 0.0696 0.0887 0.3548 6.1 5whu:A, 5whu:C, 5whu:D, 5whu:E, 5whu:I, 5whu:J, 5whv:F
16 2vyw:A 148 36 0.0759 0.0811 0.3333 7.8
17 3asx:A 335 52 0.0949 0.0448 0.2885 8.7 1ezf:A, 1ezf:B, 1ezf:C, 3lee:A, 3lee:B, 3lee:C, 3lee:D, 3lee:E, 3q2z:A, 3q30:A, 3v66:A, 3vj9:A, 3vjc:A, 3vjc:B, 3vjc:C, 3vjc:D, 3vjc:E, 3vjc:F, 3wc9:A, 3wc9:B, 3wc9:C, 3wc9:D, 3wc9:E, 3wc9:F, 3wcd:A, 3wcd:B, 3wcd:D, 3wcd:E, 3wcf:A, 3wcf:B, 3wcf:C, 3wcf:D, 3wcf:E, 3wcf:F, 3wch:A, 3wch:B, 3wch:C, 3wch:D, 3wch:E, 3wch:F, 3wci:A, 3wci:B, 3wci:C, 3wci:D, 3wci:E, 3wci:F, 3wcj:A, 3wcj:B, 3wcj:C, 3wcj:D, 3wcj:E, 3wcj:F, 3wcl:A, 3wcm:A, 3wcm:B, 3wcm:C, 3wcm:D, 3wcm:E, 3wcm:F, 3wef:A, 3wef:B, 3wef:C, 3wef:D, 3wef:E, 3weg:A, 3weh:A, 3wei:A, 3wej:A, 3wek:A, 3wsa:A, 3wsa:B, 3wsa:C, 3wsa:E, 8wtq:A, 8wtr:A
18 8f0p:A 1116 44 0.0949 0.0134 0.3409 8.7 8f0q:A, 8f0r:A, 8f0s:A
19 6r2q:A 265 68 0.1139 0.0679 0.2647 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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