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BioLiP
>protein
SMLTELIASNRRSAAIHAFVDTGLSTHFKDGIYVDISELSRKSGVNYARFSRLCDFLVEMGVLVSNDNKFRLSDECHVFA
NPESFESFMIKLEICSHYSNAWLMYGKSLFEDDGKSAFEMAHGRPFFEYLDGNKFLKSNFDALMTRVSNLIVEKLLGIYD
FNQHNRILDVGGGEGELLVRISEKVKGKHYAVLDRYSELPVSDNIDFINGNFLNSIPSGYDLYILKNVLHNWSDSDSILI
LENFRKAMDKNSSLLLINMVKEPEFSRSFDILMDVLFLGKERSFTEFEYLANQAGLVVQETKVIDQSYSPYSFIKLQIK

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bgt:A 319 319 1.0000 1.0000 1.0000 0.0 8bgt:B, 8bgx:A, 8bgx:B, 8bgx:C, 8bgx:D, 8bgy:A, 8bgy:B, 8bgy:C, 8bgy:D, 8bgz:A, 8bgz:B, 8bgz:C, 8bgz:D, 8bh0:A, 8bh0:B, 8bh0:C, 8bh0:D, 8bh0:E, 8bh0:F, 8bh0:G, 8bh0:H, 8bib:A, 8bib:B, 8bib:C, 8bib:D, 8bid:A, 8bid:B, 8bid:C, 8bid:D, 8bih:A, 8bih:B, 8bih:C, 8bih:D, 8bih:E, 8bih:F, 8bih:G, 8bih:H, 8bih:I, 8bih:J, 8bih:K, 8bih:L
2 8bif:A 318 321 0.6395 0.6415 0.6355 1.10e-148 8bif:B, 8bif:C, 8bif:D
3 8bie:A 318 321 0.6395 0.6415 0.6355 2.25e-146 8bie:B, 8bij:A, 8bij:B
4 8bic:B 323 321 0.6082 0.6006 0.6044 3.06e-139 8bic:A
5 8bir:A 321 321 0.5831 0.5794 0.5794 3.37e-136 8big:A, 8big:B, 8big:C, 8big:D, 8big:E, 8big:F, 8big:G, 8big:H, 8bii:A, 8bii:B, 8bii:C, 8bii:D, 8bii:E, 8bii:F, 8bii:G, 8bii:H, 8bir:B
6 6c5b:A 332 317 0.2445 0.2349 0.2461 3.51e-25 6c5b:B
7 1qzz:A 340 214 0.1944 0.1824 0.2897 1.17e-24 1r00:A, 1xds:A, 1xds:B, 1xdu:A
8 3gwz:A 339 306 0.2602 0.2448 0.2712 1.87e-23 3gwz:D, 3gwz:C, 3gwz:B, 3gxo:A, 3gxo:D, 3gxo:C, 3gxo:B
9 6clx:B 342 213 0.1693 0.1579 0.2535 1.66e-22 6clx:A
10 5xoh:A 348 198 0.1912 0.1753 0.3081 1.24e-19
11 7waq:D 365 196 0.1944 0.1699 0.3163 1.74e-19 7vb8:B, 7vb8:A, 7waq:B, 7waq:A, 7waq:C, 7war:B, 7war:A, 7was:A, 7was:B
12 7pg7:D 329 184 0.1661 0.1611 0.2880 2.18e-19
13 3lst:A 333 198 0.1944 0.1862 0.3131 7.57e-19 3lst:B
14 1tw2:B 350 215 0.1912 0.1743 0.2837 2.38e-18 5eeg:A, 5eeg:B, 5eeh:A, 5eeh:B, 5eeh:C, 5jr3:A, 5jr3:B, 5jr3:C, 7owb:A, 7oy1:A, 7oy1:B, 7pga:A, 7pga:B, 7pga:C, 7pga:D, 7pgj:A, 7phd:A, 7phd:B, 7phe:A, 7phe:B, 7phf:A, 7phf:D, 7phf:C, 1tw2:A, 1tw3:A, 1tw3:B, 4wxh:A, 4wxh:B
15 6i6m:B 357 204 0.1818 0.1625 0.2843 4.03e-18 6i5z:A, 6i5z:B, 6i5z:D, 6i6k:A, 6i6k:B, 6i6l:A, 6i6l:B, 6i6m:A, 6i6n:A, 6i6n:B
16 7v6l:B 347 196 0.1787 0.1643 0.2908 7.99e-18 7v6j:A, 7v6j:B, 7v6l:A
17 6nej:B 346 210 0.1975 0.1821 0.3000 1.90e-17 6neg:A, 6neg:B, 6neh:A, 6neh:B, 6nej:A
18 3p9i:A 357 211 0.1881 0.1681 0.2844 1.22e-16 3p9c:A, 3p9i:B, 3p9i:C, 3p9i:D, 3p9k:A, 3p9k:B, 3p9k:C, 3p9k:D
19 1fp1:D 340 180 0.1630 0.1529 0.2889 5.04e-16 1fpq:A
20 3i58:A 328 202 0.1912 0.1860 0.3020 6.56e-16 3i53:A, 3i53:B, 3i58:B, 3i5u:A, 3i5u:B, 3i64:A, 3i64:B
21 6cig:A 349 203 0.2006 0.1834 0.3153 7.11e-16 1fp2:A
22 6i71:A 353 212 0.1787 0.1615 0.2689 2.55e-15 6i71:B, 6i72:A, 6i72:B, 6i73:A, 6i73:B, 6yjw:A, 6yjw:B
23 1kyw:C 361 196 0.1693 0.1496 0.2755 6.04e-15 1kyw:F, 1kyz:A, 1kyz:C, 1kyz:E
24 4pgh:D 358 198 0.1818 0.1620 0.2929 7.41e-14 4pgh:A, 4pgh:B, 4pgh:C
25 5cvj:D 361 196 0.1505 0.1330 0.2449 3.70e-13 5cvj:A, 5cvj:B, 5cvj:C, 5cvu:A, 5cvu:B, 5cvu:C, 5cvu:D, 5cvv:A, 5cvv:B, 3reo:A, 3reo:B, 3reo:C, 3reo:D, 3tky:A, 3tky:B, 3tky:C, 3tky:D
26 6inw:B 390 194 0.1661 0.1359 0.2732 1.05e-11 6inw:A, 6iv7:A, 6iv7:B, 6ix3:A, 6ix3:B, 6ix5:A, 6ix5:B, 6ix7:A, 6ix7:B, 6ix8:A, 6ix8:B, 6ix9:A, 6ix9:B, 6j1o:A, 6j1o:B, 6j24:B, 6j24:A, 6j46:A, 6j46:B, 5zzd:A, 5zzd:B
27 1zg3:A 358 215 0.2006 0.1788 0.2977 1.32e-11 1zga:A, 1zgj:A, 1zhf:A
28 2qyo:A 353 206 0.1881 0.1700 0.2913 5.11e-11 2qyo:B
29 5icc:A 352 193 0.1536 0.1392 0.2539 1.60e-09 5ice:A, 5icf:A
30 7clf:A 335 143 0.1129 0.1075 0.2517 3.04e-09 7clf:B
31 4a6d:A 345 153 0.1254 0.1159 0.2614 7.84e-09 4a6e:A
32 7y3h:A 396 322 0.2602 0.2096 0.2578 8.43e-09 8gx4:A, 8gzi:A
33 8xte:A 395 325 0.2320 0.1873 0.2277 1.45e-08 8xte:B, 8xte:C, 8xte:D, 8xte:E, 8xte:F, 8xtf:A, 8xtg:A, 8xtg:B, 8xtg:C, 8xtg:D, 8xtg:E, 8xtg:F
34 8pha:A 450 284 0.1975 0.1400 0.2218 3.21e-08 8pha:B
35 4evi:A 360 223 0.1975 0.1750 0.2825 3.40e-08 4e70:A, 4e70:B, 4evi:B
36 7wh9:A 476 121 0.1097 0.0735 0.2893 6.05e-07 7wh9:B, 7wh9:C
37 7wh9:A 476 56 0.0502 0.0336 0.2857 9.9 7wh9:B, 7wh9:C
38 7phf:B 270 186 0.1536 0.1815 0.2634 2.70e-06
39 4u1q:A 341 126 0.1066 0.0997 0.2698 4.30e-05 4u1q:B, 4u1q:C, 4u1q:D, 4x3q:A, 4x3q:B, 4x3q:C, 4x3q:D
40 5w7p:A 396 209 0.1567 0.1263 0.2392 1.65e-04 5w7r:A, 5w7s:A
41 8har:A 357 126 0.0940 0.0840 0.2381 8.21e-04 8har:B
42 7wuy:A 393 179 0.1317 0.1069 0.2346 0.002 7wuy:B, 7wvs:A, 7wvs:B, 7ww0:A, 7ww0:B
43 7bqk:A 459 120 0.1034 0.0719 0.2750 0.009 7bqk:B, 7bql:A, 7bql:B
44 8tjj:C 330 123 0.0784 0.0758 0.2033 0.016 8tjj:A, 8tjj:B, 8tjj:D, 8tjk:A, 8tjk:B
45 8joz:A 257 92 0.0846 0.1051 0.2935 0.024 4htf:A, 4htf:B
46 9fce:B 209 104 0.0721 0.1100 0.2212 0.21 9fce:A
47 5i2h:A 335 155 0.1003 0.0955 0.2065 0.25 5i2h:B
48 1x1a:A 337 289 0.1881 0.1780 0.2076 0.52 1x1b:A, 1x1c:A, 1x1d:A
49 6n1x:A 377 58 0.0564 0.0477 0.3103 0.59 6d9t:A
50 7aju:JL 283 84 0.0627 0.0707 0.2381 1.6 8cbj:y, 6rbd:y, 7wtl:JL, 7wtm:JL, 6zqd:JL, 6zqe:JL, 6zqf:JL, 6zqg:JL
51 2osx:A 449 59 0.0470 0.0334 0.2542 2.0 2osy:A, 2osy:B, 2oyk:A, 2oyk:B, 2oyl:A, 2oyl:B, 2oym:A, 2oym:B
52 7ux7:A 378 155 0.1097 0.0926 0.2258 2.4 7ux6:A, 7ux6:B, 7ux7:B, 7ux8:A, 7ux8:B
53 3a46:A 288 33 0.0408 0.0451 0.3939 4.8 3a46:B, 4nrw:A, 4nrw:B, 3vk7:A, 3vk7:B, 3vk8:A, 3vk8:B
54 6p3o:A 341 120 0.1066 0.0997 0.2833 4.9 6p3m:A, 6p3n:A
55 7xnt:C 320 105 0.0846 0.0844 0.2571 5.4
56 2aou:B 289 35 0.0408 0.0450 0.3714 6.1 2aot:A, 2aot:B, 2aou:A, 2aov:A, 2aov:B, 2aow:A, 2aow:B, 2aox:A, 2aox:B, 1jqd:A, 1jqd:B, 1jqe:A, 1jqe:B
57 7bqo:A 451 63 0.0502 0.0355 0.2540 6.5
58 4r43:A 601 91 0.0878 0.0466 0.3077 7.6 5i67:A, 4rcg:A, 4wie:A, 4wiu:A, 4wl8:A, 4wou:A, 4wpt:A, 4wpu:A, 4wpv:A
59 3bus:A 251 36 0.0313 0.0398 0.2778 7.9 3bus:B
60 7mqa:NL 278 75 0.0564 0.0647 0.2400 8.4 7wts:3, 1zq9:A, 1zq9:B
61 7v02:F 650 103 0.1066 0.0523 0.3301 8.7
62 7v00:F 695 104 0.1034 0.0475 0.3173 9.4 7v01:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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