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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMLPNLDNLKEEYQKLEEKKQEIVDRSIRMSKLSKSLIYSMIREDYKSADKYKEELTNLAKTQIEELKKYPMFYSNGFIG
LQEYVEALALYYYIKENRIPSKEELGVDTWVYLFGIGDIAGEILRKSSEELIKGNIEYAKKAKQDLESLYLDLLYIELKN
FDLRRKLDYVSNIINKLIEFIIWKSK

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5jrc:C 186 186 1.0000 1.0000 1.0000 3.85e-130 5jrc:A, 5jrc:D, 5jre:D, 5jre:H, 5jre:A, 5jre:B, 5jre:C, 5jre:F, 5jre:E, 5jre:G
2 3qb5:K 222 96 0.1505 0.1261 0.2917 1.06e-06
3 4pvd:A 342 114 0.1613 0.0877 0.2632 0.069 4pvd:B
4 3zc0:B 191 123 0.1774 0.1728 0.2683 0.10 3zc0:A, 3zc0:E, 3zc0:F, 3zc0:I, 3zc0:C, 3zc0:D, 3zc0:G, 3zc0:H, 3zc0:J, 3zc0:K, 3zc0:L, 3zc1:B, 3zc1:C, 3zc1:D, 3zc1:F, 3zc1:G
5 4z34:A 385 69 0.1022 0.0494 0.2754 0.66 4z35:A, 4z36:A
6 7td1:R 293 69 0.1022 0.0648 0.2754 0.96 7td0:R, 7td2:R, 7yu3:R, 7yu5:R, 7yu6:R, 7yu7:R, 7yu8:R
7 1zvr:A 514 72 0.1183 0.0428 0.3056 1.1 1zsq:A
8 6oon:A 785 104 0.1452 0.0344 0.2596 1.9
9 7yu4:A 266 70 0.1022 0.0714 0.2714 2.4
10 4rpm:A 395 41 0.0860 0.0405 0.3902 2.9
11 3fwr:B 146 53 0.0806 0.1027 0.2830 3.2 3fwr:A, 3fws:A, 3fws:B
12 6ql9:D 1765 44 0.0968 0.0102 0.4091 5.0 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
13 6irq:C 104 37 0.0806 0.1442 0.4054 6.9 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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