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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMLNQFPGQYSNNIFCFPPIESETKSGKKASWIICVQVVQHNTIIPITDEMFSTDVKDAVAEIFTKFFVEEGAVRISKMT
RVTEGKNLGKKNATTVVHQAFKDALSKYNRHARQKRGNRGMIPPMLVKYFNIIPKTFFEEETDPIVQRKRNGVRAVACQQ
GDGCILLYSRTEKEFLGLDNIKKELKQLYLFIDVRVYLDGELYLHRKPLQWIAGQANAKTDSSELHFYVFDCFWSDQLQM
PSNKRQQLLTNIFKQKEDLTFIHQVENFSVKNVDEALRLKAQFIKEGYEGAIVRNANGPYEPGYNNYHSAHLAKLKPLLD
AEFILVDYTQGKKGKDLGAILWVCELPNKKRFVVTPKHLTYADRYALFQKLTPALFKKHLYGKELTVEYAELSPKTGIPL
QARAVGFRE

The query sequence (length=409) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6imj:A 412 408 0.9878 0.9806 0.9902 0.0 6imj:B, 6imk:A, 6iml:A, 6imn:B, 6imn:A
2 6dt1:A 464 205 0.1467 0.1293 0.2927 6.24e-08 6dt1:E
3 4eq5:A 516 302 0.1785 0.1415 0.2417 1.22e-07
4 6wbo:A 555 299 0.1687 0.1243 0.2308 6.76e-07
5 2cfm:A 561 278 0.1638 0.1194 0.2410 1.38e-06
6 7obn:A 299 135 0.0856 0.1171 0.2593 1.38e-06
7 3gde:A 551 214 0.1198 0.0889 0.2290 9.97e-06
8 3l2p:A 535 159 0.0929 0.0710 0.2390 5.13e-05
9 4d05:A 258 151 0.0954 0.1512 0.2583 3.83e-04 4d05:B
10 2q2t:A 293 60 0.0416 0.0580 0.2833 0.005 2q2u:A, 2q2u:B, 2q2u:C, 2q2u:D
11 1p8l:A 276 60 0.0416 0.0616 0.2833 0.006 1fvi:A
12 8u6x:A 247 146 0.0954 0.1579 0.2671 0.006
13 6ras:I 433 219 0.1296 0.1224 0.2420 0.33 6rar:I, 6rau:I, 6rce:I
14 4rg1:A 285 73 0.0513 0.0737 0.2877 2.7 4rg1:B
15 7k5b:B 4524 48 0.0440 0.0040 0.3750 8.6 8bx8:B, 7k58:B, 7kek:B
16 7kyc:A 1178 28 0.0293 0.0102 0.4286 8.9 7drx:A, 7dsh:A, 7dsi:A, 7f7f:A, 7ky6:A, 7kyb:A, 7whv:A, 7whw:A
17 3crz:A 257 107 0.0685 0.1089 0.2617 9.1 2qdx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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