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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SMKLAELTLESDDFITSDKLFNFCKSTFGAKYVKTDFIKFRQYQYIVSNCGWRDDTDVVFLENTPVLVTGHSDYDISERE
IDIIRLPNIRAWFCQNRNIPHPKVISFPLGITNKDEPNSEIHRIIGNTDRILEVSKTPKEIKNLVYMNITVKNFPEERQR
IVDLYSDKSWVTIGKGEVSEEGHRKFLEDMYAHKFCFAPRGNGIDTHRLWESLYLRTIPIVKKHIAMEQFTDLPILFVND
WENITEEYLNEQYDIIMAKDWNLDKLKIDYWYQKILEYS

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8asa:B 282 280 1.0000 0.9894 0.9964 0.0 8asa:A, 8asa:C, 8asa:D, 8asa:E, 8asa:F, 8asa:G, 8asa:H, 8avq:A, 8avq:B, 8avq:C, 8avq:D, 8q8i:A
2 7amv:W 637 66 0.0753 0.0330 0.3182 2.1
3 7sck:A 642 65 0.0573 0.0249 0.2462 2.5
4 7zay:A 566 65 0.0573 0.0283 0.2462 2.7 7scj:A
5 7uqx:A 583 65 0.0573 0.0274 0.2462 3.0 7uqy:A
6 4ar9:A 392 99 0.1004 0.0714 0.2828 5.8 4ar8:A, 4ar8:B, 4ar9:B
7 6xeo:A 1118 39 0.0394 0.0098 0.2821 6.8
8 6x2f:A 1144 39 0.0394 0.0096 0.2821 6.9 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
9 3gaz:A 331 41 0.0358 0.0302 0.2439 7.0 3gaz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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