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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SMKKEFTELYDFIFDPIFLVRYGYYDRSIKNKKMNTAKVELDNEYGKSDSFYFKVFNMESFADYLRSHDLKTHFNGKKPL
STDPVYFNIPKNIEARRQYKMPNLYSYMALNYYICDNKKEFIEVFIDNKFSTSKFFNQLNFDYPKTQEITQTLLYGGIKK
LHLDLSNFYHTLYTHSIPWMIDGKSASKQNRKKGFSNTLDTLITACQYDETHGIPTGNLLSRIITELYMCHFDKQMEYKK
FVYSRYVDDFIFPFTFENEKQEFLNEFNLICRENNLIINDNKTKVDNFPFVDKSSKSDIFSFFENITSTNSNDKWIKEIS
NFIDYCVNEEHLGNKGAIKCIFPVITNTLKQKKVDTKNIDNIFSKRNMVTNFNVFEKILDLSLKDSRLTNKFLTFFENIN
EFGFSSLSASNIVKKYFSNNSKGLKEKIDHYRKNNFNQELYQILLYMVVFEIDDLLNQEELLNLIDLNIDDYSLILGTIL
YLKNSSYKLEKLLKKIDQLFINTHANYDVKTSRMAEKLWLFRYFFYFLNCKNIFSQKEINSYCQSQNYNSGQNGYQTELN
WNYIKGQGKDLRANNFFNELIVKEVWLISCGENEDFKYLN

The query sequence (length=600) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r07:F 600 600 1.0000 1.0000 1.0000 0.0 7r06:A, 7r06:F, 7r06:B, 7r06:E, 7r06:C, 7r06:D, 7r07:A, 7r07:B, 7r07:C, 7r07:D, 7r07:E
2 5hhk:B 289 79 0.0383 0.0796 0.2911 0.010
3 7k9y:A 425 244 0.0817 0.1153 0.2008 0.043 6ar1:A, 6ar1:D, 6ar3:A, 6ar3:D, 7k9y:D
4 8bgj:A 203 73 0.0433 0.1281 0.3562 0.13 8bgj:B, 8bgj:C
5 9c0i:A 425 44 0.0267 0.0376 0.3636 0.25 9c0j:A
6 8t2s:D 389 72 0.0333 0.0514 0.2778 0.47 8t2r:D, 8t2t:D, 7uim:D, 7uin:D
7 8h2h:D 599 118 0.0483 0.0484 0.2458 0.97
8 8fli:B 458 84 0.0367 0.0480 0.2619 1.2 6me0:C, 6mec:C
9 5g2x:C 486 74 0.0350 0.0432 0.2838 1.3 7d0f:C, 7d0g:C, 7d1a:C
10 7uhy:A 771 80 0.0350 0.0272 0.2625 1.6 7uhy:B
11 5f0o:A 1018 45 0.0283 0.0167 0.3778 2.0
12 8oz7:A 597 97 0.0533 0.0536 0.3299 2.3 8oz7:B, 8oz7:C, 8oz7:D
13 3ad7:D 91 66 0.0283 0.1868 0.2576 3.8 3ad8:D, 3ad9:D, 3ada:D, 1vrq:D, 1x31:D
14 6cpu:A 526 118 0.0550 0.0627 0.2797 4.4 6cpt:A
15 4cfo:A 327 75 0.0300 0.0550 0.2400 7.2 4cfo:B, 4cfp:A, 4cfp:B, 4chx:A
16 2gag:D 91 63 0.0267 0.1758 0.2540 7.2 2gah:D
17 6rm3:SJ0 171 121 0.0550 0.1930 0.2727 7.9
18 1a26:A 351 60 0.0350 0.0598 0.3500 9.4 1efy:A, 6i8m:A, 6i8t:A, 1pax:A, 2pax:A, 3pax:A, 4pax:A
19 7bkp:A 689 85 0.0433 0.0377 0.3059 9.5 6g19:A, 6gjz:A, 6gkh:A, 6gkm:A, 6h66:A, 7nic:A, 7niq:B
20 7rm7:A 222 53 0.0300 0.0811 0.3396 9.6 7rzk:A, 7snb:A, 7uq1:A
21 4wz9:B 887 42 0.0217 0.0147 0.3095 9.8 4wz9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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