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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMKKEFTELYDFIFDPIFLVRYGYYDRSIKNKKMNTAKVELDNEYGKSDSFYFKVFNMESFADYLRSHDLKTHFNGKKPL
STDPVYFNIPKNIEARRQYKMPNLYSYMALNYYICDNKKEFIEVFIDNKFSTSKFFNQLNFDYPKTQEITQTLLYGGIKK
LHLDLSNFYHTLYTHSIPWMIDGKSASKQKKGFSNTLDTLITACQYDETHGIPTGNLLSRIITELYMCHFDKQMEYKKFV
YSRYVDDFIFPFTFENEKQEFLNEFNLICRENNLIINDNKTKVDNFPFVDKSSKSDIFSFFENITSTNSNDKWIKEISNF
IDYCVNEEHLGNKGAIKCIFPVITNTLKQKKVDTKNIDNIFSKRNMVTNFNVFEKILDLSLKDSRLTNKFLTFFENINEF
GFSSLSASNIVKKYFSNNSKGLKEKIDHYRKNNFNQELYQILLYMVVFEIDDLLNQEELLNLIDLNIDDYSLILGTILYL
KNSSYKLEKLLKKIDQLFINTHANYDVKTSRMAEKLWLFRYFFYFLNCKNIFSQKEINSYCQSQNYNSGQNGYQTELNWN
YIKGQGKDLRANNFFNELIVKEVWLISCGENEDFKYLN

The query sequence (length=598) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r07:F 600 600 1.0000 0.9967 0.9967 0.0 7r06:A, 7r06:F, 7r06:B, 7r06:E, 7r06:C, 7r06:D, 7r07:A, 7r07:B, 7r07:C, 7r07:D, 7r07:E
2 7k9y:A 425 242 0.0803 0.1129 0.1983 0.004 6ar1:A, 6ar1:D, 6ar3:A, 6ar3:D, 7k9y:D
3 5hhk:B 289 130 0.0552 0.1142 0.2538 0.009
4 8bgj:A 203 73 0.0435 0.1281 0.3562 0.13 8bgj:B, 8bgj:C
5 9c0i:A 425 44 0.0268 0.0376 0.3636 0.25 9c0j:A
6 8t2s:D 389 72 0.0334 0.0514 0.2778 0.50 8t2r:D, 8t2t:D, 7uim:D, 7uin:D
7 8h2h:D 599 118 0.0485 0.0484 0.2458 0.94
8 8fli:B 458 84 0.0368 0.0480 0.2619 1.2 6me0:C, 6mec:C
9 5g2x:C 486 74 0.0351 0.0432 0.2838 1.4 7d0f:C, 7d0g:C, 7d1a:C
10 7uhy:A 771 80 0.0351 0.0272 0.2625 1.5 7uhy:B
11 5f0o:A 1018 45 0.0284 0.0167 0.3778 2.0
12 8oz7:A 597 97 0.0535 0.0536 0.3299 2.1 8oz7:B, 8oz7:C, 8oz7:D
13 3ad7:D 91 66 0.0284 0.1868 0.2576 3.7 3ad8:D, 3ad9:D, 3ada:D, 1vrq:D, 1x31:D
14 6cpu:A 526 118 0.0552 0.0627 0.2797 4.4 6cpt:A
15 4cfo:A 327 75 0.0301 0.0550 0.2400 7.0 4cfo:B, 4cfp:A, 4cfp:B, 4chx:A
16 2gag:D 91 63 0.0268 0.1758 0.2540 7.2 2gah:D
17 6rm3:SJ0 171 121 0.0552 0.1930 0.2727 7.6
18 1a26:A 351 60 0.0351 0.0598 0.3500 9.2 1efy:A, 6i8m:A, 6i8t:A, 1pax:A, 2pax:A, 3pax:A, 4pax:A
19 7rm7:A 222 53 0.0301 0.0811 0.3396 9.4 7rzk:A, 7snb:A, 7uq1:A
20 4wz9:B 887 42 0.0217 0.0147 0.3095 9.5 4wz9:A
21 7bkp:A 689 85 0.0435 0.0377 0.3059 9.6 6g19:A, 6gjz:A, 6gkh:A, 6gkm:A, 6h66:A, 7nic:A, 7niq:B
22 5cqg:A 596 49 0.0284 0.0285 0.3469 9.8 5cqg:B, 6e53:A, 7kqm:A, 7kqn:A, 7kqn:D, 3kyl:A, 6uso:A, 6usp:A, 6usq:A, 6usr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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