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BioLiP
>protein
SMKISPMLLSDIEQVVELENKTWSEQNTPVPLPVASKDQIIQKFESNTHFLVAKIKDKIVGVLDYSSLYPFPSGQHIVTF
GIAVAEKERRKGIGRALVQIFLNEVKSDYQKVLIHVLSSNQEAVLFYKKLGFDLEARLTKQFFLKGQYVDDLIYSYDLE

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ld2:B 162 159 1.0000 0.9815 1.0000 1.77e-115 3ld2:A, 3ld2:C, 3ld2:D
2 5c88:A 158 153 0.2893 0.2911 0.3007 6.41e-08 6ag4:A, 6ag5:A, 5c88:B, 4lx9:A, 4r3k:A, 4r3l:A, 2x7b:A
3 4jwp:A 165 143 0.2516 0.2424 0.2797 2.43e-07
4 6e1x:C 176 127 0.2075 0.1875 0.2598 1.39e-06 5cnp:B, 5cnp:D, 5cnp:F, 6cx8:A, 6cx8:B, 6cx8:C, 6cx8:D, 6cx8:E, 6cx8:F, 6e1x:A, 6e1x:B, 6e1x:D, 4mhd:A, 4mhd:B, 4mhd:C, 4mi4:A, 4mi4:B, 4mi4:C, 4ncz:A, 4ncz:C, 4ncz:B, 4r57:A, 4r57:B, 4r57:C, 4r57:D, 4r57:E, 4r57:F, 4r57:G, 4r57:H, 4r57:I, 4r57:J, 4r57:K, 4r57:L, 4r87:A, 4r87:B, 4r87:C, 4r87:D, 4r87:E, 4r87:F, 4r87:G, 4r87:H, 4r87:I, 4r87:J, 4r87:K, 4r87:L, 5ug4:A, 5ug4:B, 5ug4:C, 4ygo:A, 4ygo:C, 4ygo:D, 4ygo:E
5 4mbu:A 165 102 0.1635 0.1576 0.2549 6.49e-06 4mbu:B
6 4pv6:G 154 90 0.2013 0.2078 0.3556 6.59e-06 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
7 6th0:A 176 87 0.1698 0.1534 0.3103 8.00e-06 6tgx:A, 6tgx:B, 6th0:B
8 2ge3:A 164 78 0.1384 0.1341 0.2821 9.29e-06 2ge3:B, 2ge3:C
9 2j8m:A 171 147 0.2013 0.1871 0.2177 2.53e-05 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
10 2cnm:A 151 75 0.1509 0.1589 0.3200 4.01e-05 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
11 6ao7:A 153 121 0.2138 0.2222 0.2810 7.99e-05
12 1s7n:B 179 148 0.1950 0.1732 0.2095 3.32e-04 1s7l:A, 1s7n:A, 1s7n:C, 1s7n:D
13 3wr7:A 170 157 0.2516 0.2353 0.2548 4.60e-04 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
14 2ob0:C 166 61 0.1321 0.1265 0.3443 5.47e-04 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
15 2vi7:C 165 89 0.1509 0.1455 0.2697 0.001
16 6d72:B 176 38 0.0943 0.0852 0.3947 0.002 6d72:A
17 6z00:A 156 60 0.1321 0.1346 0.3500 0.003 6yzz:A, 6z00:B
18 6zmp:A 190 73 0.1509 0.1263 0.3288 0.005 6zmp:B
19 7ucl:A 616 104 0.1950 0.0503 0.2981 0.005 7ucl:B
20 8gxk:B 188 160 0.2201 0.1862 0.2188 0.009 8gxk:A, 8gxk:C, 8gxk:D
21 5wph:A 179 103 0.1698 0.1508 0.2621 0.009 6m7g:A, 6m7g:C, 6m7g:B, 6m7g:D, 6m7g:E, 6m7g:F, 6m7g:L, 5wph:B
22 1wwz:A 157 92 0.1887 0.1911 0.3261 0.010 1wwz:B
23 6vfn:A 167 39 0.1006 0.0958 0.4103 0.010 6vfn:F, 6vfn:B, 6vfn:C, 6vfn:D, 6vfn:E, 6vfn:H, 6vfn:I, 6vfn:J, 6vfn:G, 6vfn:L, 6vfn:K
24 5hgz:A 211 77 0.1195 0.0900 0.2468 0.014 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
25 1yvk:A 152 131 0.2390 0.2500 0.2901 0.020 1yvk:B, 1yvk:C, 1yvk:D
26 7l1k:A 149 66 0.1258 0.1342 0.3030 0.021
27 7wx5:A 288 55 0.1195 0.0660 0.3455 0.038 7wx6:A, 7wx7:A
28 6wqc:A 293 52 0.1069 0.0580 0.3269 0.090 6wqb:A
29 7uci:A 686 62 0.1447 0.0335 0.3710 0.11 7uci:B
30 1cm0:A 162 112 0.1950 0.1914 0.2768 0.23 1cm0:B, 4nsq:A, 4nsq:B, 4nsq:C, 4nsq:D
31 7kd7:A 204 61 0.1132 0.0882 0.2951 0.23 7kd7:D, 7kpu:D, 7kpu:A, 4u9v:B, 4u9w:B, 4u9w:A, 4u9w:C, 4u9w:D
32 5h86:A 167 123 0.2013 0.1916 0.2602 0.28 8e6o:A, 8e6o:B, 8e6o:C, 8h65:C, 8h65:D, 8h65:E, 8h65:F, 8h65:B, 8h65:A, 8h65:G, 8h65:H, 8h66:E, 8h66:C, 8h66:D, 8h66:F, 8h66:B, 8h66:A, 8h66:G, 8h66:H, 8h6c:C, 8h6c:D, 8h6c:E, 8h6c:F, 8h6c:B, 8h6c:A, 8h6c:G, 8h6c:H, 8h6d:C, 8h6d:D, 8h6d:E, 8h6d:F, 8h6d:B, 8h6d:A, 8h6d:G, 8h6d:H, 5h84:A, 5trl:C, 5trl:D, 5trl:E, 5trl:F, 5trl:B, 5trl:A, 5trl:G, 5trl:H, 1z4r:A
33 6bvc:A 154 83 0.1509 0.1558 0.2892 0.46 1bo4:A, 1bo4:B
34 3f5b:A 172 44 0.1069 0.0988 0.3864 0.51
35 5hmn:B 159 79 0.1572 0.1572 0.3165 0.78 5hmn:A, 5hmn:C, 5hmn:E, 5hmn:F
36 5xyi:K 90 53 0.0881 0.1556 0.2642 1.4
37 2bue:A 179 53 0.1069 0.0950 0.3208 1.4 2prb:A, 2qir:A, 1v0c:A, 2vqy:A
38 1tiq:A 173 48 0.0943 0.0867 0.3125 1.6 1tiq:B
39 5jph:B 144 57 0.0881 0.0972 0.2456 3.1 5jph:A, 5jph:C
40 6sjy:B 175 58 0.0943 0.0857 0.2586 3.2 6sjy:A, 6sjy:C, 6sk1:A, 6sl8:A, 6sll:A, 6sll:B
41 6hiv:DD 791 55 0.1069 0.0215 0.3091 4.2 6hiw:DD, 6hiy:DD, 7pua:DD, 7pub:DD, 6sga:DD, 6sgb:DD
42 4ri1:B 179 45 0.1069 0.0950 0.3778 4.5 4ri1:A, 4ri1:C
43 1mcx:A 304 21 0.0629 0.0329 0.4762 5.6
44 8g0l:A 158 55 0.1195 0.1203 0.3455 6.3 7stx:A, 6vp9:A
45 4evy:A 147 104 0.1635 0.1769 0.2500 7.2 4evy:B
46 5myj:AJ 98 77 0.1321 0.2143 0.2727 7.3
47 4a01:A 740 56 0.1006 0.0216 0.2857 8.5 4a01:B, 6afs:A, 6afs:B, 6aft:A, 6aft:B, 6afu:A, 6afu:B, 6afv:A, 6afv:B, 6afw:A, 6afw:B, 6afx:A, 6afx:B, 6afy:A, 6afy:B, 6afz:A, 6afz:B, 5gpj:A, 5gpj:B, 5gpj:C, 5gpj:D
48 7daj:B 150 98 0.1384 0.1467 0.2245 9.8 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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