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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMKIDVVTIFPEYLQPVRQSLPGKAIDAGLVDVAVHDLRRWTHDVHKSVDDSPYGGGPGMVMKPTVWGDALDEICTSETL
LVVPTPAGYPFTQETAWQWSTEDHLVIACGRYEGIDQRVADDAATRMRVREVSIGDYVLNGGEAAALVIIEAVLRLVPGV
LGNASLLEGPSYTRPPSWRGMDVPPVLLSGDHAKIAAWRAEQSRQRTIERRPDLL

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qrb:A 220 219 1.0000 0.9773 0.9817 8.97e-156 6nw6:A, 6nw6:B, 6nw7:A, 6nw7:B, 6qo2:A, 6qo2:B, 6qo3:A, 6qo3:B, 6qo4:A, 6qo4:B, 6qo6:A, 6qo6:B, 6qoa:A, 6qoa:B, 6qoc:A, 6qoc:B, 6qod:A, 6qod:B, 6qoe:B, 6qof:A, 6qof:B, 6qog:A, 6qoh:A, 6qoh:B, 6qoi:A, 6qoi:B, 6qoj:A, 6qoj:B, 6qok:A, 6qok:B, 6qol:A, 6qol:B, 6qom:A, 6qon:A, 6qon:B, 6qoo:A, 6qoo:B, 6qop:A, 6qop:B, 6qoq:A, 6qoq:B, 6qor:A, 6qor:B, 6qos:A, 6qos:B, 6qot:A, 6qot:B, 6qou:A, 6qou:B, 6qov:A, 6qov:B, 6qow:A, 6qow:B, 6qox:B, 6qqq:A, 6qqq:B, 6qqr:B, 6qqs:A, 6qqt:A, 6qqt:B, 6qqu:A, 6qqu:B, 6qqv:A, 6qqv:B, 6qqw:A, 6qqx:A, 6qqx:B, 6qqy:A, 6qqy:B, 6qqz:A, 6qr0:A, 6qr1:A, 6qr2:A, 6qr3:A, 6qr3:B, 6qr4:A, 6qr4:B, 6qr5:A, 6qr6:A, 6qr6:B, 6qr7:A, 6qr7:B, 6qr8:A, 6qr8:B, 6qr9:A, 6qr9:B, 6qra:A, 6qra:B, 6qrb:B, 6qrc:A, 6qrc:B, 6qrd:A, 6qrd:B, 6qre:A, 6qre:B, 6qrf:A, 6qrg:A, 6qrg:B, 7rez:A, 7rez:B, 7rf0:A, 7rf0:B
2 6qqs:B 204 215 0.9256 0.9755 0.9256 1.06e-137 6qqw:B, 6qqz:B, 6qr0:B, 6qr1:B, 6qr2:B, 6qr5:B, 6qrf:B
3 5zhk:A 208 213 0.7581 0.7837 0.7653 2.16e-116 6jof:A, 5zhj:A, 5zhl:A
4 6w15:A 202 214 0.7395 0.7871 0.7430 1.88e-111
5 8fci:A 197 215 0.7163 0.7817 0.7163 1.43e-103 8fci:B
6 7kff:A 249 229 0.6930 0.5984 0.6507 4.73e-102
7 4ig6:A 223 227 0.5023 0.4843 0.4758 8.70e-66
8 8b1n:B 410 225 0.4512 0.2366 0.4311 2.74e-54
9 8b1n:A 433 225 0.4512 0.2240 0.4311 5.77e-54 8byh:A, 8byh:B, 8ri0:A, 8ri0:B
10 1p9p:A 235 218 0.4372 0.4000 0.4312 1.94e-51
11 8apw:A 250 223 0.4279 0.3680 0.4126 2.01e-49 8apt:A, 8apu:A, 8apv:A, 3axz:A, 5d9f:A, 4mcb:A, 4mcb:B, 4mcc:A, 4mcc:B, 4mcd:A, 1uak:A, 1ual:A, 1uam:A, 4ypw:A, 4ypx:A, 4ypy:A, 4ypz:A, 4yq0:A, 4yq1:A, 4yq2:A, 4yq3:A, 4yq4:A, 4yq5:A, 4yq6:A, 4yq7:A, 4yq8:A, 4yq9:A, 4yqa:A, 4yqb:A, 4yqc:A, 4yqd:A, 4yqg:A, 4yqi:A, 4yqj:A, 4yqk:A, 4yql:A, 4yqn:A, 4yqo:A, 4yqp:A, 4yqq:A, 4yqr:A, 4yqs:A, 4yqt:A, 4yvg:A, 4yvh:A, 4yvi:A, 4yvi:B, 4yvj:A, 4yvj:B, 4yvk:A, 4yvk:B
12 5wyr:B 248 227 0.4233 0.3669 0.4009 4.67e-47 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B
13 7mys:A 239 222 0.3721 0.3347 0.3604 6.82e-44 7mys:B
14 4h3z:B 256 233 0.4000 0.3359 0.3691 2.82e-42 4h3y:A, 4h3y:B, 4h3z:A
15 7fjg:A 384 144 0.1767 0.0990 0.2639 0.011 8i29:A
16 3eh1:A 737 96 0.1209 0.0353 0.2708 0.89
17 6s18:A 143 37 0.0558 0.0839 0.3243 5.1 6s18:B, 6s38:A, 6s38:B
18 2ynm:D 488 49 0.0698 0.0307 0.3061 6.5
19 4xfj:B 397 47 0.0698 0.0378 0.3191 6.7 4xfj:A
20 6p25:B 690 29 0.0465 0.0145 0.3448 8.5 6p2r:B
21 5gvh:A 311 54 0.0791 0.0547 0.3148 8.8
22 3af5:A 638 62 0.1070 0.0361 0.3710 8.9 3af6:A
23 8u19:A 403 44 0.0605 0.0323 0.2955 9.2 8u09:A, 8u1i:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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