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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMKIDVVTIFPEYLQPVGLVDVAVHDLRRWTHDVHKSVDDSPYGGGPGMVMKPTVWGDALDEICTSETLLVVPTPAGYPF
TQETAWQWSTEDHLVIACGRYEGIDQRVADDAATRMRVREVSIGDYVLNGGEAAALVIIEAVLRLVPGVSLLEGPSYTRP
PSWRGMDVPPVLLSGDHAKIAAWRAEQSRQRTIERRPDLLGFDSPT

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qqs:B 204 206 0.9854 0.9951 0.9854 1.37e-144 6qqw:B, 6qqz:B, 6qr0:B, 6qr1:B, 6qr2:B, 6qr5:B, 6qrf:B
2 6qrb:A 220 219 0.9709 0.9091 0.9132 2.24e-140 6nw6:A, 6nw6:B, 6nw7:A, 6nw7:B, 6qo2:A, 6qo2:B, 6qo3:A, 6qo3:B, 6qo4:A, 6qo4:B, 6qo6:A, 6qo6:B, 6qoa:A, 6qoa:B, 6qoc:A, 6qoc:B, 6qod:A, 6qod:B, 6qoe:B, 6qof:A, 6qof:B, 6qog:A, 6qoh:A, 6qoh:B, 6qoi:A, 6qoi:B, 6qoj:A, 6qoj:B, 6qok:A, 6qok:B, 6qol:A, 6qol:B, 6qom:A, 6qon:A, 6qon:B, 6qoo:A, 6qoo:B, 6qop:A, 6qop:B, 6qoq:A, 6qoq:B, 6qor:A, 6qor:B, 6qos:A, 6qos:B, 6qot:A, 6qot:B, 6qou:A, 6qou:B, 6qov:A, 6qov:B, 6qow:A, 6qow:B, 6qox:B, 6qqq:A, 6qqq:B, 6qqr:B, 6qqs:A, 6qqt:A, 6qqt:B, 6qqu:A, 6qqu:B, 6qqv:A, 6qqv:B, 6qqw:A, 6qqx:A, 6qqx:B, 6qqy:A, 6qqy:B, 6qqz:A, 6qr0:A, 6qr1:A, 6qr2:A, 6qr3:A, 6qr3:B, 6qr4:A, 6qr4:B, 6qr5:A, 6qr6:A, 6qr6:B, 6qr7:A, 6qr7:B, 6qr8:A, 6qr8:B, 6qr9:A, 6qr9:B, 6qra:A, 6qra:B, 6qrb:B, 6qrc:A, 6qrc:B, 6qrd:A, 6qrd:B, 6qre:A, 6qre:B, 6qrf:A, 6qrg:A, 6qrg:B, 7rez:A, 7rez:B, 7rf0:A, 7rf0:B
3 6w15:A 202 201 0.7621 0.7772 0.7811 1.64e-111
4 5zhk:A 208 209 0.7476 0.7404 0.7368 3.44e-106 6jof:A, 5zhj:A, 5zhl:A
5 8fci:A 197 201 0.7427 0.7766 0.7612 4.73e-105 8fci:B
6 7kff:A 249 229 0.6796 0.5622 0.6114 4.02e-91
7 4ig6:A 223 227 0.4903 0.4529 0.4449 5.33e-59
8 8b1n:B 410 225 0.4466 0.2244 0.4089 4.44e-48
9 8b1n:A 433 225 0.4466 0.2125 0.4089 5.78e-48 8byh:A, 8byh:B, 8ri0:A, 8ri0:B
10 1p9p:A 235 217 0.4369 0.3830 0.4147 2.45e-46
11 8apw:A 250 223 0.4272 0.3520 0.3946 5.92e-44 8apt:A, 8apu:A, 8apv:A, 3axz:A, 5d9f:A, 4mcb:A, 4mcb:B, 4mcc:A, 4mcc:B, 4mcd:A, 1uak:A, 1ual:A, 1uam:A, 4ypw:A, 4ypx:A, 4ypy:A, 4ypz:A, 4yq0:A, 4yq1:A, 4yq2:A, 4yq3:A, 4yq4:A, 4yq5:A, 4yq6:A, 4yq7:A, 4yq8:A, 4yq9:A, 4yqa:A, 4yqb:A, 4yqc:A, 4yqd:A, 4yqg:A, 4yqi:A, 4yqj:A, 4yqk:A, 4yql:A, 4yqn:A, 4yqo:A, 4yqp:A, 4yqq:A, 4yqr:A, 4yqs:A, 4yqt:A, 4yvg:A, 4yvh:A, 4yvi:A, 4yvi:B, 4yvj:A, 4yvj:B, 4yvk:A, 4yvk:B
12 5wyr:B 248 227 0.4223 0.3508 0.3833 8.43e-42 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B
13 7mys:A 239 222 0.3786 0.3264 0.3514 3.27e-41 7mys:B
14 4h3z:B 256 233 0.4223 0.3398 0.3734 3.69e-40 4h3y:A, 4h3y:B, 4h3z:A
15 2ynm:D 488 57 0.0971 0.0410 0.3509 0.082
16 3nns:A 117 84 0.1019 0.1795 0.2500 0.20 3nns:B
17 3eh1:A 737 105 0.1359 0.0380 0.2667 0.69
18 6s18:A 143 37 0.0583 0.0839 0.3243 4.9 6s18:B, 6s38:A, 6s38:B
19 4w5k:A 380 106 0.1456 0.0789 0.2830 6.4 4w5k:B
20 4xfj:B 397 47 0.0728 0.0378 0.3191 7.5 4xfj:A
21 5gvh:A 311 54 0.0825 0.0547 0.3148 8.9
22 6p25:B 690 29 0.0485 0.0145 0.3448 9.0 6p2r:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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