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BioLiP
>protein
SMIEDIKGYKPHTEEKIGKVNAIKDAEVRLGLIFDALYDEFWEALDNCEDCEFAKNYAESLDQLTIAKTKLKEASMWACR
AVFQPEEKY

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uq2:A 89 89 1.0000 1.0000 1.0000 1.62e-62 7uq2:E, 7uq2:B, 7uq2:D, 7uq2:C, 7uq2:F
2 8h2j:A 92 85 0.2809 0.2717 0.2941 0.002 8h2j:B, 8h2j:C, 8h2j:D, 8h2j:E, 8h2j:F, 8h39:A, 8h39:B, 8h39:C, 8h39:D, 8h39:E, 8h39:F, 8ixz:A, 8ixz:B, 8ixz:C, 8ixz:D, 8ixz:E, 8ixz:F, 8iy0:A, 8iy0:B, 8iy0:C, 8iy0:D, 8iy0:E, 8iy0:F, 8iy1:A, 8iy1:B, 8iy1:C, 8iy1:D, 8iy1:E, 8iy1:F, 8iy2:A, 8iy2:B, 8iy2:C, 8iy2:D, 8iy2:E, 8iy2:F, 8j8o:A, 8j8o:B, 8j8o:C, 8j8o:D, 8j8o:E, 8j8o:F
3 6rz8:A 366 62 0.2472 0.0601 0.3548 0.18 6rz6:A, 6rz7:A, 6rz9:A
4 6os0:A 395 63 0.2809 0.0633 0.3968 1.1 6os1:A, 6os2:A, 8th3:A, 8th4:A
5 5k2a:A 398 51 0.2135 0.0477 0.3725 2.2 8a2o:A, 8a2p:A, 6aqf:A, 7aro:A, 8c9w:A, 8cic:A, 8cu6:A, 8cu7:A, 8du3:A, 4eiy:A, 7ezc:A, 7ezc:B, 8fyn:A, 8gne:A, 6gt3:A, 5iu4:A, 5iu7:A, 5iu8:A, 5iua:A, 5iub:A, 5jtb:A, 6jzh:A, 5k2b:A, 5k2c:A, 5k2d:A, 6lpj:A, 6lpk:A, 6lpl:A, 6mh8:A, 5mzj:A, 5mzp:A, 5n2r:A, 5nlx:A, 5nm2:A, 5nm4:A, 5olg:A, 5olh:A, 5olo:A, 5olv:A, 5olz:A, 5om1:A, 5om4:A, 6ps7:A, 8pwn:A, 7px4:A, 7pyr:A, 8rln:A, 7rm5:A, 8rqq:A, 6s0l:A, 6s0q:A, 7t32:A, 5uig:A, 5uvi:A, 5vra:A, 6wqa:A, 6zdr:A, 6zdv:A
6 6c66:O 212 34 0.1348 0.0566 0.3529 2.6 5u0a:A
7 1w5f:A 315 31 0.1348 0.0381 0.3871 3.4 1w5f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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