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BioLiP
>protein
SMICYNQQSSQPPTTKTCSETSCYKKTWRDHRGTIIERGCGCPKVKPGIKLHCCRTDKCNN

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9avv:G 62 61 1.0000 0.9839 1.0000 1.10e-40 9avv:F, 9awk:F, 9awk:G
2 5ebx:A 62 61 0.7377 0.7258 0.7377 9.86e-27 6ebx:B
3 1v6p:A 62 62 0.6885 0.6774 0.6774 3.32e-24 1v6p:B
4 8we8:B 60 58 0.4590 0.4667 0.4828 7.33e-13
5 8vy8:B 75 67 0.4426 0.3600 0.4030 9.33e-07 1abt:A, 2btx:A, 1bxp:A, 1haa:A, 1haj:A, 5hbv:A, 1hc9:A, 1hc9:B, 1hoy:A, 1idg:A, 1idh:A, 1jbd:A, 1kc4:A, 1kl8:A, 1l4w:A, 1ljz:A, 2qc1:A, 1rgj:A, 6uwz:G, 8vy8:A, 8vy8:E, 8vy8:G
6 1lxg:A 71 44 0.3443 0.2958 0.4773 7.02e-06 1lxh:A, 7pc0:K, 6zfm:A, 6zfm:B, 6zfm:D, 6zfm:E
7 2bhi:A 60 53 0.3279 0.3333 0.3774 0.030 2bhi:B, 1h0j:A, 1h0j:B, 1h0j:C, 1xt3:A
8 5mg9:A 65 25 0.2131 0.2000 0.5200 1.3
9 7c28:A 65 65 0.3279 0.3077 0.3077 1.3 7c28:B
10 5ta1:A 627 27 0.1475 0.0144 0.3333 5.3 5ta0:A, 5ta0:B, 5ta5:A, 5ta5:B
11 8y85:A 514 30 0.2131 0.0253 0.4333 6.5 8y85:B, 8y86:A
12 6bka:A 374 28 0.1639 0.0267 0.3571 7.3
13 6a5m:A 488 40 0.1639 0.0205 0.2500 7.6 6a5k:A
14 5lj3:C 882 25 0.1311 0.0091 0.3200 8.1 6exn:C, 5gam:C, 5gan:C, 5lj5:C, 5lqw:B, 5mps:C, 5mq0:C, 5nrl:C
15 6j6g:C 920 25 0.1311 0.0087 0.3200 8.1 7b9v:C, 6bk8:B, 7dco:C, 5gm6:C, 5gmk:C, 6j6h:C, 6j6n:C, 6j6q:C, 3jcm:H, 6teo:A, 6teo:C, 5wsg:C, 5y88:C, 5ylz:C, 5zwm:C, 5zwo:C
16 6a5n:A 502 40 0.1639 0.0199 0.2500 8.8
17 8hr5:A 466 28 0.1475 0.0193 0.3214 9.2
18 5ex0:A 429 37 0.2459 0.0350 0.4054 9.3 7bj1:A, 5ccl:A, 5ccm:A, 5ex3:A, 5hi7:A, 5hq8:A, 5hq8:B, 6ijl:A, 3mek:A, 7o2a:A, 7o2b:A, 7o2c:A, 6o9o:A, 8owo:A, 3oxf:A, 3oxf:B, 3oxg:A, 3oxl:A, 6p6g:A, 6p6k:A, 6p7z:A, 6paf:A, 3pdn:A, 7qlb:A, 7qnr:A, 7qnu:A, 3qwp:A, 3ru0:A, 3ru0:B, 5v37:A, 5xxd:A, 5xxg:A, 5xxj:A, 5yjo:A, 6yuh:A, 6zrb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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