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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAY
GTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQES
N

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ge4:A 161 161 1.0000 1.0000 1.0000 4.84e-118 3ge4:B, 3ge4:C, 3ge4:D, 3ge4:E, 3ge4:F, 3ge4:G, 3ge4:H, 3ge4:I, 3ge4:J, 3ge4:K, 3ge4:L
2 7aqs:E 159 154 0.5714 0.5786 0.5974 7.13e-61 3ak9:A, 3ak9:C, 3ak9:B, 3ak9:D, 3ak9:E, 3ak9:G, 3ak9:F, 3ak9:H, 3ak9:I, 3ak9:K, 3ak9:J, 3ak9:L, 7aqs:A, 7aqs:C, 7aqs:B, 7aqs:D, 7aqs:G, 7aqs:F, 7aqs:H, 7aqs:I, 7aqs:K, 7aqs:J, 7aqs:L, 7aqs:M, 7aqs:O, 7aqs:N, 7aqs:P, 7aqs:Q, 7aqs:S, 7aqs:R, 7aqs:T, 7aqs:U, 7aqs:W, 7aqs:V, 7aqs:X, 1f30:A, 1f30:B, 1f30:E, 1f30:F, 1f30:G, 1f30:H, 1f30:I, 1f30:J
3 4dyu:H 157 154 0.5342 0.5478 0.5584 2.55e-59 4dyu:A, 4dyu:B, 4dyu:C, 4dyu:D, 4dyu:E, 4dyu:F, 4dyu:I, 4dyu:J, 4dyu:K, 4dyu:L
4 1vei:A 175 152 0.3230 0.2971 0.3421 2.16e-20 1uvh:A, 1uvh:B, 1uvh:C, 1uvh:D, 1veq:A, 1veq:J, 1veq:B, 1veq:C, 1veq:D, 1veq:E, 1veq:F, 1veq:L, 1veq:G, 1veq:H, 1veq:I, 1veq:K
5 2wlu:A 166 145 0.3106 0.3012 0.3448 4.86e-20
6 2bw1:G 165 146 0.2733 0.2667 0.3014 9.30e-19 2bw1:C, 2bw1:D, 2bw1:A, 2bw1:B, 2bw1:H, 2bw1:E, 2bw1:F, 2bw1:K, 2bw1:L, 2bw1:I, 2bw1:J, 1umn:K, 2ux1:A, 2ux1:B, 2ux1:C, 2ux1:D, 2ux1:E, 2ux1:F, 2ux1:G, 2ux1:H, 2ux1:I, 2ux1:J, 2ux1:K, 2ux1:L, 2v15:A, 2v15:B, 2v15:C, 2v15:D, 2v15:E, 2v15:F, 2v15:G, 2v15:H, 2v15:I, 2v15:J, 2v15:K, 2v15:L, 2xjm:A, 2xjm:B, 2xjm:C, 2xjm:D, 2xjm:E, 2xjm:F, 2xjm:G, 2xjm:H, 2xjm:I, 2xjm:J, 2xjm:K, 2xjm:L, 2xjn:A, 2xjn:C, 2xjn:D, 2xjn:E, 2xjn:F, 2xjn:G, 2xjn:H, 2xjn:I, 2xjn:J, 2xjn:K, 2xjn:L, 2xkq:A, 2xkq:B, 2xkq:C, 2xkq:D, 2xkq:E, 2xkq:F, 2xkq:G, 2xkq:H, 2xkq:I, 2xkq:J, 2xkq:K, 2xkq:L
7 1n1q:A 149 150 0.2609 0.2819 0.2800 2.15e-18 1n1q:B, 1n1q:C, 1n1q:D
8 6hx2:B 156 142 0.2484 0.2564 0.2817 2.61e-15 6hui:D, 6hui:A, 6hui:B, 6hui:C, 6hui:E, 6hui:F, 6hx2:A, 6hx2:C, 6hx2:D, 6hx2:E, 6hx2:F, 2iy4:B, 2iy4:C, 2iy4:D, 2iy4:E, 2iy4:G, 2iy4:F, 2iy4:H, 2iy4:I, 2iy4:J, 2iy4:K, 2iy4:L, 2iy4:M, 2iy4:O, 2iy4:N, 2iy4:P, 2iy4:Q, 2iy4:S, 2iy4:R, 2iy4:T, 2iy4:U, 2iy4:X, 2iy4:V, 2iy4:Y, 1qgh:E, 1qgh:G, 1qgh:A, 1qgh:C, 1qgh:I, 1qgh:K, 1qgh:F, 1qgh:H, 1qgh:J, 1qgh:L, 1qgh:B, 1qgh:D, 6sev:A, 6sev:B, 6sev:D, 6sev:E
9 2c2f:A 178 140 0.2547 0.2303 0.2929 6.38e-14 2c2u:A, 2f7n:A
10 1jig:A 146 147 0.2298 0.2534 0.2517 1.06e-13 1jig:B, 1jig:C, 1jig:D
11 2yjj:G 157 124 0.2609 0.2675 0.3387 2.35e-13 2yjj:A, 2yjj:B, 2yjj:C, 2yjj:I, 2yjj:D, 2yjj:J, 2yjj:E, 2yjj:F, 2yjj:H, 2yjj:K, 2yjj:L, 2yjk:A, 2yjk:B, 2yjk:C, 2yjk:I, 2yjk:D, 2yjk:J, 2yjk:E, 2yjk:F, 2yjk:G, 2yjk:H, 2yjk:K, 2yjk:L
12 1ji5:A 142 141 0.2422 0.2746 0.2766 9.26e-12 1ji5:B, 1ji5:C, 1ji5:D
13 4cyb:J 173 150 0.2547 0.2370 0.2733 5.90e-11 4cyb:A, 4cyb:B, 4cyb:C, 4cyb:D, 4cyb:E, 4cyb:F, 4cyb:G, 4cyb:H, 4cyb:I, 4cyb:K, 4cyb:L
14 2c2j:A 165 143 0.2236 0.2182 0.2517 7.69e-11 2c6r:A, 6tb5:A, 6tgt:A
15 8ffd:B 156 135 0.2609 0.2692 0.3111 1.28e-10 8ffb:A, 8ffb:B, 8ffb:L, 8ffb:C, 8ffb:D, 8ffb:E, 8ffb:F, 8ffb:G, 8ffb:I, 8ffb:H, 8ffb:J, 8ffb:K, 8ffc:A, 8ffc:E, 8ffc:B, 8ffc:L, 8ffc:C, 8ffc:J, 8ffc:D, 8ffc:F, 8ffc:G, 8ffc:I, 8ffc:H, 8ffc:K, 8ffc:M, 8ffc:N, 8ffc:O, 8ffc:P, 8ffd:A, 8ffd:C, 8ffd:D, 8ffd:E, 8ffd:F, 8ffd:G, 8ffd:H, 8ffd:I, 8ffd:J, 8ffd:K, 8ffd:L, 8ffd:M, 8ffd:N, 8ffd:O, 8ffd:P
16 1ji4:A 144 132 0.2298 0.2569 0.2803 1.64e-10 4evb:A, 4evc:A, 1ji4:D, 1ji4:B, 1ji4:C, 1ji4:E, 1ji4:H, 1ji4:F, 1ji4:G, 1ji4:I, 1ji4:L, 1ji4:J, 1ji4:K
17 4m33:A 161 136 0.2484 0.2484 0.2941 2.25e-10 4m32:A, 4m32:B, 4m32:C, 4m32:D, 4m33:B, 4m33:C, 4m33:D, 4m34:A, 4m34:B, 4m34:C, 4m34:D, 4m35:A, 4m35:B, 4m35:C, 4m35:D, 5ww3:A, 5ww3:B, 5ww3:C, 5ww3:D, 5ww4:A, 5ww4:B, 5ww4:C, 5ww4:D, 5ww5:A, 5ww5:C, 5ww5:B, 5ww6:A, 5ww6:B, 5ww6:C, 5ww6:D, 5ww7:A, 5ww7:C, 5ww7:B, 5ww7:D, 5ww8:A, 5ww8:B, 5ww8:C, 5ww8:D, 5ww9:A, 5ww9:B, 5ww9:C, 5ww9:D, 2z90:A, 2z90:B, 2z90:C, 2z90:D
18 3kwo:A 149 120 0.1863 0.2013 0.2500 1.47e-09 3kwo:B, 3kwo:C, 3kwo:D
19 4a25:B 169 138 0.2671 0.2544 0.3116 5.16e-08 4a25:A, 4a25:C, 4a25:D
20 2fjc:B 156 117 0.1988 0.2051 0.2735 9.27e-08 2fjc:A, 2fjc:D, 2fjc:C, 2fjc:E, 2fjc:H, 2fjc:F, 2fjc:G, 2fjc:I, 2fjc:L, 2fjc:J, 2fjc:K, 2fjc:M, 2fjc:N, 2fjc:O, 2fjc:P
21 5lbh:A 143 119 0.1925 0.2168 0.2605 2.14e-07 5lbh:J, 5lbh:B, 5lbh:C, 5lbh:D, 5lbh:G, 5lbh:E, 5lbh:F, 5lbh:L, 5lbh:H, 5lbh:I, 5lbh:K
22 1moj:A 180 119 0.1988 0.1778 0.2689 2.75e-07 1moj:B, 1moj:C, 1moj:D, 1tjo:A, 1tjo:B, 1tjo:C, 1tjo:D, 1tk6:A, 1tk6:B, 1tk6:C, 1tk6:D, 1tko:A, 1tko:B, 1tko:C, 1tko:D, 1tkp:A, 1tkp:B, 1tkp:D, 1tkp:C
23 2vxx:B 173 131 0.1801 0.1676 0.2214 6.87e-07 2vxx:A, 2vxx:D, 2vxx:C
24 6lkp:C 172 131 0.1739 0.1628 0.2137 4.10e-06 6lkp:A, 6lkp:B, 6lkp:D, 6lkp:E, 6lkp:F
25 2pyb:A 151 126 0.1863 0.1987 0.2381 4.86e-05 2pyb:B, 2pyb:C, 2pyb:D
26 5hjh:D 178 119 0.1491 0.1348 0.2017 7.05e-04 5hjh:A, 5hjh:B, 5hjh:C, 5i4j:A, 5i4j:B, 5i4j:C, 5i4j:D
27 8w1e:B 172 68 0.1491 0.1395 0.3529 0.022 8w1d:A, 8w1e:A, 8w1e:C, 8w1e:D, 8w1e:E, 8w1e:F, 8w1e:G, 8w1e:H, 8w1e:I, 8w1e:J, 8w1e:K, 8w1e:L, 8w1f:A, 8w1f:B, 8w1f:C, 8w1f:D, 8w1f:E, 8w1f:F, 8w1f:G, 8w1f:H, 8w1f:I, 8w1f:J, 8w1f:K, 8w1f:L
28 7asd:AA 413 76 0.1366 0.0533 0.2895 0.24 7asd:BA, 7asd:CA, 7asd:DA, 7asd:EA, 7asd:FA, 7asd:GA, 7asd:HA, 5yyl:A
29 8cfu:A 467 50 0.1180 0.0407 0.3800 3.5 8ajs:AAA, 8ajs:DDD, 8ajs:BBB, 8ajs:CCC, 8ajt:AAA, 8ajt:DDD, 8ajt:BBB, 8ajt:CCC, 8aju:AAA, 8aju:CCC, 8ajv:AAA, 8ajv:DDD, 8ajv:BBB, 8ajv:CCC, 8ajv:FFF, 8ajv:III, 8ajv:GGG, 8ajv:HHH, 8ajw:AAA, 8ajw:DDD, 8ajw:BBB, 8ajw:CCC, 8azf:A, 8azf:C, 8cfb:A, 8cfb:D, 8cfb:B, 8cfb:C, 8cfc:A, 8cfc:D, 8cfc:B, 8cfc:C, 8cfd:A, 8cfd:D, 8cfd:B, 8cfd:C, 8cfe:A, 8cfe:D, 8cfe:B, 8cfe:C, 8cfg:A, 8cfg:D, 8cfg:B, 8cfg:C, 8cfh:A, 8cfh:D, 8cfh:B, 8cfh:C, 8cfi:A, 8cfi:D, 8cfi:B, 8cfi:C, 8cfj:A, 8cfj:D, 8cfj:B, 8cfj:C, 8cfk:A, 8cfk:D, 8cfk:B, 8cfk:C, 8cfl:A, 8cfl:D, 8cfl:B, 8cfl:C, 8cfm:A, 8cfm:D, 8cfm:B, 8cfm:C, 8cfn:A, 8cfn:C, 8cfo:A, 8cfo:D, 8cfo:B, 8cfo:C, 8cfp:A, 8cfp:D, 8cfp:B, 8cfp:C, 8cfq:A, 8cfq:D, 8cfq:B, 8cfq:C, 8cfr:A, 8cfr:D, 8cfr:B, 8cfr:C, 8cfs:A, 8cfs:D, 8cfs:B, 8cfs:C, 8cft:A, 8cft:D, 8cft:B, 8cft:C, 8cfu:D, 8cfu:B, 8cfu:C, 8cfv:A, 8cfv:D, 8cfv:B, 8cfv:C, 8cfw:A, 8cfw:D, 8cfw:B, 8cfw:C, 8cfx:A, 8cfx:D, 8cfx:B, 8cfx:C, 8cfx:G, 8cfx:J, 8cfx:H, 8cfx:I, 8cfy:A, 8cfy:D, 8cfy:B, 8cfy:C, 8cfy:G, 8cfy:J, 8cfy:H, 8cfy:I, 8cfz:A, 8cfz:D, 8cfz:B, 8cfz:C, 8cfz:H, 8cfz:K, 8cfz:I, 8cfz:J, 8cg0:A, 8cg0:D, 8cg0:B, 8cg0:C, 8cg1:A, 8cg1:D, 8cg1:B, 8cg1:C, 8cg1:G, 8cg1:J, 8cg1:H, 8cg1:I, 8cg2:A, 8cg2:C, 6f3m:A, 6f3m:B, 6f3m:C, 6f3m:D, 6f3n:A, 6f3n:B, 6f3n:C, 6f3n:D, 6f3o:A, 6f3o:B, 6f3o:C, 6f3o:D, 6f3p:A, 6f3p:C, 6f3q:A, 6f3q:B, 6f3q:C, 6f3q:D, 7zd0:A, 7zd0:D, 7zd0:B, 7zd0:C, 7zd1:A, 7zd1:D, 7zd1:B, 7zd1:C, 7zd2:A, 7zd2:D, 7zd2:B, 7zd2:C, 7zd3:A, 7zd3:D, 7zd3:B, 7zd3:C, 7zd4:A, 7zd4:D, 7zd4:B, 7zd4:C
30 7all:AAA 498 41 0.0807 0.0261 0.3171 4.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218