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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMGLKLLHPPKPYAMTSDPESYASVCVMKKWPIIATNVIDEVSRNISKALEAGMSDKAAYVTQGKEIISLLNQLKYDLQH
NRPLKPLVGQGPDIDDYNEELEQVGPLTWGDAPWLYAGCYFYRIMSLFFQARSEWNRHDPFFEQKDFTLRSSKSAIEEFA
KRYVHLNSELASIQENKDDKAAYMIFVEMAEISLWGNAQSLQGQKAVEESQKNILVNDFPKIWSKLSKVRHGRIDFVLNN
AGFELFVDLLFATYLLKTEIAETIILHPKDVPWFVSDVLVNDIPHLFNSLTSYFSGEGVQKLASDLAEFHAEGKIVIRPN
PFWTTAHYFGRLPDVAPKLLSDLEQSDMVIFKGDLNFRKLTGDCEWPHTTPFAEALGPIAGKFNILALRTIKADVVVGLG
KGVYEEIAKDNPHWERTGKYAVVEFCPKD

The query sequence (length=429) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7t7n:B 440 440 0.9907 0.9659 0.9659 0.0 8tkz:B
2 7u1x:A 439 440 0.6084 0.5945 0.5932 0.0 7t7k:B, 7t7k:A, 7t7o:B, 7t7o:A, 7u1v:A, 7u1v:B, 7u1x:B, 7u1y:A
3 5by0:A 465 460 0.3893 0.3591 0.3630 2.00e-80 5f13:A, 5f13:B, 5f13:C, 3pt1:A
4 6umq:A 415 423 0.3193 0.3301 0.3239 5.47e-63 6umq:B
5 4g16:A 302 115 0.0746 0.1060 0.2783 0.69 2c47:A, 2c47:B, 2c47:C, 2c47:D, 2chl:A, 2cmw:A, 4g17:A, 6gro:A, 4hgl:A, 4hgs:A, 2izr:A, 2izs:A, 2izt:A, 2izu:A
6 6gjc:A 2770 53 0.0420 0.0065 0.3396 2.1 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
7 6gos:1 284 40 0.0303 0.0458 0.3250 2.2 6gos:2, 6grg:1, 6grg:2, 6grh:1, 6grh:2, 6gri:1, 6gri:2
8 4v8l:D 2822 15 0.0256 0.0039 0.7333 2.4 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
9 7aaq:A 487 82 0.0513 0.0452 0.2683 3.3 7aar:A, 6h7d:A
10 6jcy:C 1139 77 0.0466 0.0176 0.2597 5.0 6bzo:C, 6c04:C, 6c06:C, 6dv9:C, 6dvb:C, 6dvc:C, 6dvd:C, 6dve:C, 8e74:C, 8e79:C, 8e82:C, 8e8m:C, 8e95:C, 6edt:C, 6ee8:C, 6eec:C, 8ehq:C, 8ej3:C, 8eoe:C, 8eof:C, 8eos:C, 8eot:C, 8exy:C, 6fbv:C, 8hih:C, 6jcx:C, 7kif:C, 7kin:C, 6koo:C, 6kop:C, 6koq:C, 6m7j:C, 7p5x:AC, 7rwi:C, 6tye:C, 6tyf:C, 6tyg:C, 7u22:C, 5uh5:C, 5uh6:C, 5uh8:C, 5uh9:C, 5uha:C, 5uhb:C, 5uhc:C, 5uhd:C, 5uhe:C, 5uhf:C, 5uhg:C, 5vi5:C, 6vvx:C, 6vvy:C, 6vvz:C, 6vw0:C, 5zx2:C
11 6vz8:G 159 43 0.0420 0.1132 0.4186 5.2 6vz8:K, 6vz8:O, 6vz8:S
12 8p6j:CCC 106 82 0.0513 0.2075 0.2683 5.7 8p6j:BBB, 8p6j:FFF
13 6vvt:C 883 77 0.0466 0.0227 0.2597 5.7
14 6ccv:C 1099 77 0.0466 0.0182 0.2597 5.9 6cce:C, 6kon:C, 5tw1:C, 6vvs:C
15 6dcf:C 858 77 0.0466 0.0233 0.2597 6.0
16 5b2o:A 1455 123 0.0629 0.0186 0.2195 6.1 5b2p:A, 5b2q:A
17 8s9t:B 185 88 0.0536 0.1243 0.2614 7.0 8s9u:B, 8s9v:B, 8s9x:B
18 3ckq:A 302 55 0.0420 0.0596 0.3273 7.1 3ckn:A, 3cko:A, 3ckv:A
19 1vdd:A 199 50 0.0396 0.0854 0.3400 9.9 4jcv:A, 4jcv:B, 2v1c:A, 2v1c:B, 1vdd:B, 1vdd:C, 1vdd:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218