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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMGDVNWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGGGRLVAVYCV
DGNGDSLMPCGRCRQLLYEHGGPELKIMTPKGVQTMAQLLPQ

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3r2n:D 122 122 1.0000 1.0000 1.0000 1.40e-88 3r2n:A, 3r2n:B, 3r2n:C
2 4f3w:B 121 119 0.5984 0.6033 0.6134 1.88e-51 4f3w:A, 4f3w:C, 4f3w:D
3 6kw6:A 119 118 0.5738 0.5882 0.5932 2.15e-50 6kw6:B
4 3mpz:A 125 118 0.5574 0.5440 0.5763 9.56e-47 3mpz:B, 3mpz:C, 3mpz:D
5 4wig:A 126 119 0.5574 0.5397 0.5714 1.05e-46 3ijf:X, 4wif:A, 4wif:B, 4wig:B
6 2d30:A 124 122 0.3770 0.3710 0.3770 1.01e-19 2d30:B
7 2fr6:A 137 110 0.3607 0.3212 0.4000 8.27e-19 2fr5:A, 2fr5:C, 2fr5:B, 2fr5:D, 2fr6:C, 2fr6:B, 2fr6:D, 1zab:A, 1zab:C, 1zab:B, 1zab:D
8 1mq0:A 130 110 0.3607 0.3385 0.4000 1.18e-18 1mq0:B
9 1r5t:A 141 126 0.4016 0.3475 0.3889 1.33e-18 1r5t:B, 1r5t:C, 1r5t:D
10 7zob:E 136 120 0.3607 0.3235 0.3667 1.35e-18 7zob:A, 7zob:B, 7zob:C, 7zob:D, 7zob:F, 7zob:G, 7zob:H
11 3dmo:A 133 87 0.3197 0.2932 0.4483 8.98e-18 3dmo:B, 3dmo:C, 3dmo:D
12 1jtk:A 131 95 0.2705 0.2519 0.3474 4.19e-14 1jtk:B, 1uwz:A, 1uwz:B, 1ux0:A, 1ux0:B, 1ux1:A, 1ux1:B, 1ux1:C, 1ux1:D
13 2z3i:A 129 111 0.2951 0.2791 0.3243 2.39e-07 1wn5:A, 1wn5:B, 1wn5:C, 1wn5:D, 1wn6:A, 1wn6:B, 2z3g:A, 2z3g:B, 2z3g:C, 2z3g:D, 2z3h:A, 2z3h:B, 2z3h:C, 2z3h:D, 2z3i:B, 2z3i:C, 2z3i:D, 2z3j:A, 2z3j:B, 2z3j:C, 2z3j:D
14 3oj6:A 134 104 0.2869 0.2612 0.3365 7.43e-07 3oj6:B, 3oj6:C, 3oj6:D
15 4eg2:A 297 110 0.3115 0.1279 0.3455 1.71e-06 4eg2:B, 4eg2:C, 4eg2:D, 4eg2:E, 4eg2:F, 4eg2:G, 4eg2:H
16 6k63:A 294 52 0.1721 0.0714 0.4038 8.92e-05 6k63:B, 6k63:C, 6k63:D
17 6k63:A 294 100 0.2541 0.1054 0.3100 0.014 6k63:B, 6k63:C, 6k63:D
18 1af2:A 294 102 0.2623 0.1088 0.3137 2.92e-04 1aln:A, 1ctt:A, 1ctu:A
19 1af2:A 294 49 0.1803 0.0748 0.4490 0.004 1aln:A, 1ctt:A, 1ctu:A
20 8dvs:A 682 72 0.1475 0.0264 0.2500 0.94 7bah:A, 7bah:B, 7bai:A, 7bai:B, 7bai:E, 8dvu:A, 5f9f:A, 5f9f:C, 5f9f:E, 5f9f:G, 5f9f:I, 5f9f:K, 7jl1:A, 6kyv:B, 6kyv:D, 6kyv:F, 6kyv:H, 6kyv:J, 6kyv:L, 3lrn:A, 3lrn:B, 3lrr:A, 3lrr:B, 7mk1:A, 7mk1:B, 3ncu:A, 3ncu:B, 3og8:A, 3og8:B, 2qfb:A, 2qfb:B, 2qfb:C, 2qfb:D, 2qfb:E, 2qfb:F, 2qfb:G, 2qfb:H, 2qfb:I, 2qfb:J, 7tny:A, 7tnz:A, 7to0:A, 7to2:A
21 2yjv:C 158 53 0.1311 0.1013 0.3019 4.3
22 1iyb:A 208 70 0.1803 0.1058 0.3143 4.4 1iyb:B
23 7nxd:A 905 108 0.2787 0.0376 0.3148 5.6 9ckv:A, 7nwl:A, 3vi3:A, 3vi3:C, 3vi4:C, 3vi4:A, 4wjk:A, 4wk0:A, 4wk2:A, 4wk4:A
24 3hxu:A 441 13 0.0574 0.0159 0.5385 5.8 3hxv:A, 3hxw:A, 3hxx:A, 3hxy:A, 3hxz:A, 3hxz:B, 3hxz:C, 3hxz:D, 3hy0:A, 3hy0:B, 3hy1:A
25 2czc:A 334 22 0.0656 0.0240 0.3636 8.0 2czc:B, 2czc:C, 2czc:D
26 6sga:F3 888 34 0.0820 0.0113 0.2941 8.6 7pub:F3, 6sgb:F3
27 7pua:F3 911 34 0.0820 0.0110 0.2941 8.6
28 4ru1:A 288 29 0.1148 0.0486 0.4828 9.3 4ru1:B, 4ru1:C, 4ru1:D, 4ru1:E, 4ru1:F, 4ru1:G, 4ru1:H, 4ru1:I, 4ru1:J, 4ru1:K, 4ru1:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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