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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SMFREVRNEEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSV
QAGN

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6y2c:B 84 84 1.0000 1.0000 1.0000 2.20e-57
2 1j4w:A 145 70 0.8214 0.4759 0.9857 2.01e-44 6y2c:A
3 1j4w:A 145 77 0.2619 0.1517 0.2857 6.95e-04 6y2c:A
4 4b8t:A 106 82 0.6786 0.5377 0.6951 9.62e-37
5 3vke:A 76 57 0.2738 0.3026 0.4035 5.42e-08 2axy:B, 2axy:D, 2pqu:C, 2pqu:B, 2py9:B, 2py9:C, 3vke:B, 3vke:C, 3vke:D, 1ztg:A, 1ztg:D, 1ztg:B, 1ztg:C
6 2axy:A 72 57 0.2619 0.3056 0.3860 5.94e-07 2axy:C, 2pqu:A, 2py9:A
7 1zzi:A 82 66 0.2619 0.2683 0.3333 1.45e-05 7cre:A, 1j5k:A, 1zzi:B, 1zzj:A, 1zzj:B
8 8coo:A 191 59 0.2738 0.1204 0.3898 3.23e-04 2n8l:A, 2n8m:A
9 8coo:A 191 80 0.3214 0.1414 0.3375 0.82 2n8l:A, 2n8m:A
10 1ec6:A 87 71 0.2500 0.2414 0.2958 6.82e-04 1ec6:B
11 7yey:A 162 73 0.2738 0.1420 0.3151 0.001 7vkl:A
12 2anr:A 155 64 0.2024 0.1097 0.2656 0.003 2ann:A
13 2p2r:A 73 68 0.2619 0.3014 0.3235 0.019
14 5wwx:A 84 62 0.2381 0.2381 0.3226 0.064
15 7aqq:f 101 34 0.1548 0.1287 0.3824 0.44 7a23:c, 7a24:c, 7ar7:f, 7ar8:f, 7arb:f, 8bef:f, 8bpx:f, 8bq5:f, 8bq6:f
16 4i94:A 297 47 0.2024 0.0572 0.3617 0.78 4i94:B
17 5a22:A 2002 33 0.1548 0.0065 0.3939 3.4
18 6u1x:A 2059 33 0.1548 0.0063 0.3939 3.4
19 4hcx:A 402 70 0.2262 0.0473 0.2714 3.7 4hcx:B
20 8cvo:G 214 55 0.2143 0.0841 0.3273 3.9 8crx:G
21 3qo8:A 441 33 0.1429 0.0272 0.3636 6.5 3qo7:A
22 4zv1:A 226 43 0.1548 0.0575 0.3023 8.4 4zv2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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